genome.fa.s313.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold313
Parameters: 2 7 7 80 10 50 1000
Length:  790584

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 630 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
720871--720923	20	2.7	20	100	0	106	28	15	22	33	1.94
726357--726411	26	2.1	26	86	0	74	49	0	21	29	1.50
729295--729352	27	2.1	27	93	0	98	29	24	13	32	1.94
731731--731781	19	2.6	20	87	9	70	41	15	15	27	1.88
732507--732611	40	2.6	40	96	1	192	27	24	3	43	1.71
732936--732990	19	2.8	19	83	2	74	30	20	12	36	1.90
740728--740768	20	2.1	20	95	4	75	48	4	29	17	1.67
740789--740830	21	2.0	21	90	0	66	33	2	30	33	1.71
750130--750187	19	3.0	19	79	2	62	37	13	17	31	1.89
750690--750727	20	1.9	20	88	0	58	39	18	15	26	1.91
750689--750733	20	2.3	19	81	11	54	42	20	13	24	1.87
752646--752747	31	3.2	31	86	5	134	29	26	10	33	1.90
756996--757371	154	2.4	154	84	4	465	25	17	19	38	1.93
760338--760362	13	1.9	13	100	0	50	36	16	16	32	1.90
760318--760384	33	2.0	33	88	0	98	32	11	14	40	1.83
760425--760449	13	1.9	13	100	0	50	32	16	16	36	1.90
760438--760586	52	2.9	51	91	4	244	32	19	17	30	1.95
767191--767250	20	2.9	19	80	11	57	40	8	10	41	1.69
772618--772672	20	2.7	20	82	2	65	34	21	9	34	1.85
773517--773574	19	2.9	19	87	5	80	36	15	17	31	1.91
775308--775361	13	4.2	13	92	0	90	31	14	14	38	1.87
775485--775525	22	1.9	22	85	14	59	31	19	0	48	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
777218--777276	19	3.1	19	85	4	75	38	5	30	25	1.77
779510--779572	31	2.0	31	100	0	126	58	9	9	22	1.58
781125--781150	13	2.0	13	100	0	52	38	15	15	30	1.88
783365--783409	21	2.1	22	88	8	67	55	4	17	22	1.60
785212--785242	15	2.1	15	93	0	53	48	16	22	12	1.80
787321--787346	13	2.0	13	100	0	52	30	15	15	38	1.88
787467--787512	21	2.2	20	81	11	58	32	19	4	43	1.71
789896--789921	13	2.0	13	100	0	52	38	15	15	30	1.88

Tables:   1   2   3   4   5   6

The End!