genome.fa.s313.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold313
Parameters: 2 7 7 80 10 50 1000
Length:  790584

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 630 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545537--545601	33	2.0	33	87	6	96	35	18	12	33	1.88
548853--549573	236	3.1	234	79	8	739	27	23	12	36	1.91
548775--549607	79	10.6	78	78	7	690	26	23	12	36	1.92
551245--551345	52	1.9	52	87	0	148	35	22	16	24	1.95
551418--551516	51	1.9	51	83	0	126	29	23	23	24	1.99
556601--556788	102	1.8	102	80	4	227	34	14	23	27	1.94
563768--563797	14	2.1	15	93	6	53	70	6	10	13	1.34
564845--565073	58	4.0	58	75	5	180	47	19	9	24	1.79
564875--565035	57	2.8	56	76	8	153	46	19	9	23	1.80
564849--565073	114	2.0	115	81	0	272	47	19	9	24	1.79
565118--565160	20	2.2	20	86	0	59	60	13	4	20	1.51
566571--566611	21	2.0	21	85	0	55	36	21	14	26	1.93
567740--567779	20	2.0	20	100	0	80	45	25	10	20	1.81
569990--570050	22	2.7	22	80	9	61	73	3	18	4	1.14
570334--570358	11	2.3	11	100	0	50	16	20	16	48	1.82
570833--571416	156	3.7	154	78	10	570	35	11	13	39	1.81
572608--572661	20	2.7	20	91	5	83	31	11	18	38	1.86
578817--578856	13	3.1	13	92	0	62	32	12	15	40	1.84
581371--581434	32	2.0	32	87	3	92	29	17	14	39	1.88
581399--581456	19	3.1	18	88	11	89	34	15	17	32	1.91
581400--581455	20	2.8	20	92	7	89	32	16	17	33	1.92
581503--581527	13	1.9	13	100	0	50	32	8	16	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
581484--581552	33	2.1	33	89	5	104	30	11	18	39	1.87
586320--586373	20	2.6	21	80	11	67	33	20	7	38	1.80
592932--593055	43	3.0	40	79	12	151	36	23	4	36	1.74
594912--594946	3	11.7	3	87	0	52	28	31	0	40	1.57
594909--594948	9	4.4	9	81	12	55	25	30	0	45	1.54
596400--596425	13	2.0	13	100	0	52	30	15	15	38	1.88
597093--597247	75	2.1	75	95	0	274	26	29	6	38	1.81
597244--597287	22	2.0	22	100	0	88	40	18	4	36	1.71
602016--602114	52	1.9	52	85	4	137	36	15	18	30	1.91
602101--602127	13	2.1	13	100	0	54	33	14	22	29	1.94
602168--602234	33	2.0	33	88	0	98	40	14	11	32	1.83
602190--602214	13	1.9	13	100	0	50	32	16	16	36	1.90
602634--602672	13	3.0	13	96	0	69	35	15	17	30	1.91
610292--610318	13	2.1	13	100	0	54	40	14	14	29	1.86
613192--613265	30	2.5	30	82	4	87	39	13	24	22	1.90
613377--613583	90	2.3	88	82	8	258	28	13	31	26	1.93
613925--614411	88	5.6	89	71	7	365	44	14	17	22	1.85
613924--614071	44	3.4	41	77	14	120	47	15	17	19	1.83
613918--614423	175	2.9	172	75	9	470	44	14	17	22	1.85
615460--615510	20	2.5	20	81	6	59	3	15	1	78	0.99
619030--619522	155	3.2	153	82	4	596	38	20	17	23	1.93
621479--621765	144	2.0	145	87	6	418	52	9	9	28	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
621864--621894	16	1.9	16	93	0	53	67	3	9	19	1.33
624272--624326	29	1.9	28	85	10	76	25	12	9	52	1.68
624290--624400	30	3.8	30	71	16	90	28	12	9	48	1.73
624723--624854	57	2.3	57	77	3	149	31	9	13	45	1.75
625882--625912	10	3.1	10	95	0	53	29	3	9	58	1.46
626352--626783	156	2.6	162	75	13	391	30	11	9	49	1.70
626984--627039	14	4.2	13	76	15	51	28	3	0	67	1.07
628423--628915	136	3.5	140	81	6	556	35	8	12	43	1.74
630795--630825	13	2.4	13	94	0	53	35	12	16	35	1.87
630775--630838	33	1.9	33	84	6	85	35	15	14	34	1.88
630869--630924	20	2.8	20	87	10	80	35	16	12	35	1.86
633234--633280	22	2.2	23	85	14	66	46	0	21	31	1.51
633403--633428	13	2.0	13	100	0	52	38	15	15	30	1.88
634579--634631	19	2.7	20	85	8	72	39	18	13	28	1.88
638675--638712	15	2.4	16	86	8	60	50	18	18	13	1.78
640603--640628	13	2.0	13	100	0	52	30	0	23	46	1.53
640788--640852	13	5.0	13	94	0	112	30	18	15	35	1.92
640789--640852	26	2.5	26	100	0	128	31	18	15	34	1.93
640975--641017	20	2.2	19	84	16	52	30	20	4	44	1.72
642255--642280	13	2.0	13	100	0	52	30	15	15	38	1.88
642235--642298	32	2.0	33	87	3	94	28	14	17	40	1.88
642986--643029	21	2.1	21	83	8	54	25	31	4	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
644567--644592	13	2.0	13	100	0	52	38	15	15	30	1.88
648497--648541	21	2.1	21	88	8	65	22	17	4	55	1.60
650733--650758	13	2.0	13	100	0	52	30	15	15	38	1.88
653050--653075	13	2.0	13	100	0	52	38	15	15	30	1.88
653032--653096	32	2.0	32	87	6	94	40	18	13	27	1.89
660434--660765	133	2.5	132	80	9	349	34	11	24	29	1.90
660584--660702	53	2.3	53	85	4	152	37	10	22	28	1.88
661028--661066	20	2.0	19	90	5	60	38	25	5	30	1.78
661076--661100	13	1.9	13	100	0	50	32	16	16	36	1.90
661163--661224	33	1.9	32	87	9	90	40	16	14	29	1.88
662798--662831	3	11.3	3	87	0	50	32	0	38	29	1.58
667279--667318	20	2.0	21	95	5	73	35	15	15	35	1.88
667807--667850	20	2.1	21	83	8	54	18	47	27	6	1.73
669778--669816	20	2.0	19	90	5	60	35	23	7	33	1.83
669838--669890	21	2.5	22	82	11	67	39	16	15	28	1.89
670756--670781	13	2.0	13	100	0	52	30	15	15	38	1.88
670736--670799	33	2.0	32	87	9	94	28	14	18	39	1.90
670841--670893	20	2.6	21	82	8	65	30	16	15	37	1.90
670881--670905	13	1.9	13	100	0	50	36	16	16	32	1.90
673197--673238	21	2.0	21	86	9	59	40	0	23	35	1.55
677950--677974	13	1.9	13	100	0	50	32	16	16	36	1.90
677983--678108	52	2.4	52	91	0	207	34	18	19	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681941--681965	13	1.9	13	100	0	50	36	16	16	32	1.90
682971--683205	79	3.0	79	82	0	254	34	8	26	29	1.87
685587--685724	50	2.7	52	84	4	181	42	12	15	29	1.83
686388--686904	264	1.9	266	82	5	650	35	17	22	23	1.95
686380--686914	200	2.7	198	80	8	512	35	17	22	23	1.95
686310--687192	64	12.8	70	77	10	621	36	16	22	24	1.94
686380--687192	206	4.0	203	76	11	651	36	16	22	24	1.94
686856--687088	70	3.3	71	77	14	169	40	14	21	24	1.90
686786--687189	144	2.8	141	75	7	361	38	14	22	25	1.92
691027--691051	13	1.9	13	100	0	50	32	16	16	36	1.90
691083--691211	32	4.0	32	81	7	143	25	20	10	43	1.84
694423--694447	3	8.3	3	100	0	50	36	0	32	32	1.58
695821--695846	13	2.0	13	100	0	52	30	15	15	38	1.88
696555--696598	21	2.1	21	83	8	54	25	31	4	38	1.76
698403--698428	13	2.0	13	100	0	52	38	15	15	30	1.88
698414--698493	20	3.8	20	76	15	79	42	13	15	28	1.85
700445--700517	20	3.6	20	81	3	101	35	13	19	31	1.91
700445--700539	41	2.3	42	96	1	174	40	12	17	29	1.87
700578--700603	13	2.0	13	100	0	52	38	15	15	30	1.88
704663--704701	15	2.6	15	91	0	60	51	15	20	12	1.76
706715--706792	20	3.6	21	73	15	70	25	12	16	44	1.83
706779--706817	13	3.0	13	96	0	69	30	17	15	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
708044--708089	16	2.8	16	93	6	74	28	2	39	30	1.69
708697--708769	20	3.6	20	81	3	101	35	13	19	31	1.91
708697--708791	41	2.3	42	96	1	174	40	12	17	29	1.87
708830--708855	13	2.0	13	100	0	52	38	15	15	30	1.88
709960--709990	15	2.1	15	93	0	53	12	22	16	48	1.80
711788--711838	21	2.5	21	81	12	61	21	19	3	54	1.60
714057--714082	13	2.0	13	100	0	52	30	15	15	38	1.88
718626--718680	21	2.6	21	85	0	65	18	21	0	60	1.37
718641--718684	21	2.1	21	91	0	70	20	18	0	61	1.35
720781--720810	10	3.1	10	95	4	53	43	10	26	20	1.83

Tables:   1   2   3   4   5   6