genome.fa.s319.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold319
Parameters: 2 7 7 80 10 50 1000
Length:  718924

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 537 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291391--291454	32	2.0	33	87	3	94	28	14	17	40	1.88
293504--293546	20	2.1	21	86	4	61	9	27	44	18	1.80
296072--296102	15	2.1	15	93	0	53	12	22	16	48	1.80
297905--297949	21	2.1	21	84	8	56	22	20	4	53	1.63
300173--300198	13	2.0	13	100	0	52	30	15	15	38	1.88
300153--300216	32	2.0	33	87	3	94	28	14	17	40	1.88
301733--301851	57	2.1	57	96	0	220	14	28	10	46	1.78
304263--304288	13	2.0	13	100	0	52	30	15	15	38	1.88
304243--304306	32	2.0	33	87	3	94	28	14	17	40	1.88
308006--308101	19	5.7	19	64	26	72	34	19	13	32	1.91
308000--308100	32	3.2	32	92	0	175	34	19	12	32	1.90
308771--309951	52	24.8	51	74	13	753	31	18	26	24	1.97
308771--309671	101	9.4	101	80	10	586	31	17	26	24	1.97
309181--309259	39	2.0	39	87	0	113	26	20	24	29	1.99
309317--309525	39	5.0	39	80	13	220	26	20	26	26	1.99
309269--309525	87	3.0	86	86	3	360	27	20	26	25	1.99
309128--309892	43	16.9	43	75	13	555	29	19	26	24	1.98
309445--309951	95	5.4	95	90	3	841	30	19	26	24	1.98
309444--309951	186	2.7	185	95	0	899	30	19	26	24	1.98
310024--310077	27	2.0	27	96	0	99	25	12	37	24	1.91
310044--310264	35	6.7	34	78	11	221	35	11	32	20	1.89
310051--310299	33	7.6	33	78	9	219	34	12	30	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310181--310241	28	2.2	28	88	5	88	31	13	32	22	1.92
310208--310305	34	2.9	34	83	8	121	34	13	30	21	1.92
310261--310336	31	2.5	32	85	8	104	34	14	26	25	1.94
311623--311655	13	2.6	13	90	4	50	0	0	18	81	0.68
318670--318696	13	2.1	13	100	0	54	40	14	14	29	1.86
318748--318842	19	5.7	19	66	29	81	36	18	12	31	1.89
318740--318841	32	3.2	32	91	2	179	36	19	12	31	1.90
319933--320080	67	2.2	69	81	4	176	29	13	18	38	1.89
319961--320104	69	2.1	67	80	5	164	29	14	20	35	1.92
322756--322781	12	2.2	12	100	0	52	26	0	23	50	1.50
322991--323028	20	1.9	20	94	0	67	44	15	10	28	1.80
329354--329394	22	2.0	21	86	13	59	31	21	4	41	1.74
331075--331114	21	1.9	21	84	0	53	32	2	35	30	1.71
331680--331733	20	2.7	20	88	0	81	42	12	14	29	1.83
334469--334618	51	2.9	51	91	0	255	41	20	14	24	1.89
338368--338392	13	1.9	13	100	0	50	36	16	16	32	1.90
338430--338495	32	2.1	32	94	0	114	34	13	13	37	1.84
338435--338518	19	4.7	19	76	18	81	34	17	13	34	1.89
339698--339748	20	2.6	20	87	3	68	33	15	15	35	1.90
339695--339748	19	2.8	19	85	2	72	31	14	16	37	1.89
340108--340176	20	3.8	20	75	25	89	34	14	11	39	1.82
340130--340190	13	5.2	13	75	22	71	31	14	14	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340110--340208	33	3.0	33	94	2	164	31	15	13	40	1.85
341856--341906	25	2.0	25	100	0	102	15	27	11	45	1.81
354344--354428	37	2.3	37	100	0	170	25	15	15	43	1.86
354793--355081	28	10.4	28	84	7	313	35	29	16	18	1.93
354793--355081	55	5.2	56	81	8	313	35	29	16	18	1.93
355103--355969	144	6.0	144	84	6	867	25	25	16	32	1.96
355103--355985	245	3.6	245	88	3	1268	25	25	16	32	1.96
355103--355996	101	9.2	98	81	8	900	25	25	16	32	1.96
356920--356982	28	2.2	28	88	0	90	14	19	30	36	1.91
358552--358604	20	2.7	20	87	0	70	35	9	18	35	1.84
360819--360861	21	2.1	20	83	12	52	53	6	13	25	1.65
360819--360861	20	2.1	21	83	12	54	53	6	13	25	1.65
365446--365473	13	2.2	13	100	0	56	39	17	14	28	1.89
365514--365580	33	2.0	33	88	0	98	40	14	11	32	1.83
365536--365560	13	1.9	13	100	0	50	32	16	16	36	1.90
367605--367678	20	3.7	20	81	3	103	35	13	20	31	1.91
367623--367698	21	3.7	21	82	3	109	40	11	18	28	1.86
367605--367698	41	2.3	41	100	0	188	38	12	19	29	1.89
367737--367762	13	2.0	13	100	0	52	38	15	15	30	1.88
368221--368287	37	1.9	35	88	11	102	32	11	25	29	1.92
369801--369961	84	1.9	84	80	9	186	53	3	17	25	1.60
371413--371437	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373096--373169	20	3.7	20	81	3	103	35	13	20	31	1.91
373114--373189	21	3.7	21	82	3	109	40	11	18	28	1.86
373096--373189	41	2.3	41	100	0	188	38	12	19	29	1.89
373228--373253	13	2.0	13	100	0	52	38	15	15	30	1.88
373712--373778	37	1.9	35	88	11	102	32	11	25	29	1.92
374890--374933	21	2.0	22	86	4	63	15	4	22	56	1.57
375103--375127	13	1.9	13	100	0	50	28	16	16	40	1.89
376928--376969	22	1.9	22	95	0	75	38	4	35	21	1.75
377543--377607	20	3.6	20	73	26	81	29	15	15	40	1.88
377563--377620	13	4.9	13	70	23	56	32	15	15	36	1.89
377542--377639	33	3.0	33	93	1	162	32	15	13	38	1.86
377609--377667	20	3.1	19	81	11	68	35	11	15	37	1.84
377706--377736	13	2.4	13	94	0	53	35	16	12	35	1.87
377690--377757	33	2.1	33	88	5	102	32	13	17	36	1.89
380525--380566	22	2.1	19	86	13	57	52	0	4	42	1.22
382256--382283	14	2.0	14	100	0	56	64	0	0	35	0.94
382259--382315	16	3.8	16	81	9	66	56	0	0	43	0.99
382274--382370	36	2.6	36	86	4	131	50	0	0	49	1.00
382313--382349	15	2.4	15	90	4	56	51	0	0	48	1.00
382327--382367	22	1.9	21	90	5	64	51	0	0	48	1.00
383121--383167	12	3.7	12	81	13	58	53	0	0	46	1.00
383147--383199	23	2.2	25	86	6	74	54	1	0	43	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383754--383807	10	5.4	10	78	8	56	38	0	0	61	0.96
383754--383807	20	2.7	19	77	5	63	38	0	0	61	0.96
383976--384009	17	2.0	17	88	0	50	61	2	0	35	1.11
391652--391792	71	2.0	69	86	10	200	48	6	17	26	1.71
391854--391898	3	15.0	3	100	0	90	66	0	0	33	0.92
392229--392627	146	2.7	146	81	6	470	31	2	13	52	1.52
392229--392627	74	5.5	73	81	3	412	31	2	13	52	1.52
393432--393457	13	2.0	13	100	0	52	38	15	15	30	1.88
395674--395718	22	2.1	21	84	8	56	57	4	17	20	1.56
396836--396866	15	2.1	15	93	0	53	48	16	22	12	1.80
398629--398708	20	3.8	20	75	15	79	26	15	15	43	1.85
398694--398732	13	3.0	13	92	0	60	33	17	12	35	1.88
401253--401278	13	2.0	13	100	0	52	38	15	15	30	1.88
402579--402657	20	3.7	21	75	15	72	26	13	15	44	1.84
402644--402682	13	3.0	13	88	0	60	28	17	15	38	1.91
405223--405248	13	2.0	13	100	0	52	38	15	15	30	1.88
408974--409048	20	3.8	20	77	7	80	42	12	10	34	1.77
409067--409119	21	2.5	21	96	0	97	32	18	16	32	1.94
410087--410141	19	2.8	19	83	5	65	41	12	14	30	1.83
410084--410140	21	2.8	21	78	5	73	40	12	14	33	1.83
410172--410242	20	3.5	20	80	14	81	36	14	11	38	1.81
414753--414793	21	2.0	21	90	0	64	24	4	19	51	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414924--414989	18	3.6	18	70	11	53	57	12	0	30	1.35
415632--415682	27	1.9	26	84	11	68	54	7	1	35	1.40
417297--417323	13	2.1	13	100	0	54	37	14	14	33	1.88
417368--417416	20	2.5	19	86	3	62	36	18	16	28	1.92
417368--417420	19	2.7	20	88	2	72	37	18	15	28	1.91
417964--418164	99	2.1	97	95	1	357	34	20	7	37	1.81
419598--419642	20	2.1	22	88	8	67	11	24	42	22	1.86
419728--423385	733	5.0	733	99	0	7208	40	11	17	29	1.85
424848--424873	13	2.0	13	100	0	52	38	15	15	30	1.88
424830--424893	32	2.0	33	90	3	103	42	15	14	28	1.86

Tables:   1   2   3   4   5