genome.fa.s319.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold319
Parameters: 2 7 7 80 10 50 1000
Length:  718924

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 537 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
593484--594184	180	3.9	181	82	3	765	21	21	24	31	1.98
593797--593857	31	2.0	31	83	0	77	18	21	32	27	1.96
593520--594267	179	4.2	180	81	3	765	21	22	25	30	1.98
594519--594597	36	2.2	35	80	8	88	44	15	22	17	1.86
594581--594680	41	2.4	41	89	0	164	43	14	28	15	1.85
600596--600639	22	2.0	22	100	0	88	40	9	27	22	1.84
604170--604195	13	2.0	13	100	0	52	38	15	15	30	1.88
606408--606451	21	2.1	20	83	8	52	52	4	20	22	1.65
608255--608285	15	2.1	15	93	0	53	48	16	22	12	1.80
610364--610389	13	2.0	13	100	0	52	30	15	15	38	1.88
610510--610555	21	2.2	20	81	11	58	32	19	4	43	1.71
617431--617469	13	2.9	13	88	7	60	46	7	10	35	1.67
617430--617471	14	3.1	14	89	3	68	42	7	9	40	1.65
626354--629795	867	4.0	868	93	0	5555	32	20	20	26	1.97
634085--634129	24	1.9	23	86	13	65	77	0	6	15	0.96
634076--634130	16	3.4	15	80	12	56	76	0	7	16	1.00
634135--634183	22	2.2	22	82	7	55	75	6	14	4	1.14
635160--635187	14	2.0	14	100	0	56	28	35	7	28	1.84
635733--635908	33	5.5	32	74	10	117	33	28	13	24	1.93
635814--635924	33	3.4	32	73	14	111	29	33	15	21	1.94
635758--635924	64	2.6	62	81	4	156	29	31	14	25	1.95
636002--636201	52	3.9	52	76	7	174	24	22	14	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639935--639960	13	2.0	13	100	0	52	38	15	15	30	1.88
641922--641966	21	2.1	21	84	8	56	53	4	20	22	1.63
643770--643800	15	2.1	15	93	0	53	48	16	22	12	1.80
645879--645904	13	2.0	13	100	0	52	30	15	15	38	1.88
648452--648477	13	2.0	13	100	0	52	38	15	15	30	1.88
649454--649494	17	2.5	17	88	4	57	46	7	0	46	1.30
653065--653124	32	1.9	30	83	12	77	58	10	10	21	1.60
661086--661111	13	2.0	13	100	0	52	30	15	15	38	1.88
661066--661129	32	2.0	33	90	3	103	28	14	18	39	1.90
661160--661233	20	3.7	20	82	8	78	31	16	13	39	1.87
666280--666315	13	2.6	14	86	8	56	61	30	0	8	1.26
666717--666761	20	2.2	20	84	7	56	20	20	15	44	1.87
667970--668032	32	1.9	32	83	3	81	39	14	14	31	1.86
668758--668835	41	1.9	41	94	0	138	38	16	2	42	1.62
670358--670421	33	2.0	33	87	3	94	39	17	10	32	1.84
677917--678235	123	2.6	122	75	10	290	44	11	22	21	1.83
678062--678311	82	3.0	82	80	6	249	42	11	23	22	1.86
677867--678275	41	10.0	41	72	9	237	43	11	22	22	1.85
678123--678342	82	2.7	81	77	9	214	43	11	23	21	1.86
679208--679471	88	3.0	88	77	6	255	43	12	17	26	1.85
681211--681264	27	2.0	27	96	0	99	46	12	14	25	1.81
682769--682843	20	3.8	20	81	0	87	32	16	12	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
696418--696467	22	2.3	22	92	0	82	54	10	6	30	1.58
697378--697414	18	2.1	19	85	10	51	51	2	0	45	1.15
697673--697957	155	1.9	152	80	6	333	40	18	14	27	1.89
699240--699303	33	2.0	32	90	3	101	34	14	15	35	1.88
699292--699332	20	2.0	20	85	0	55	29	7	21	41	1.80
699402--699444	22	2.0	22	90	9	70	39	9	6	44	1.64
705008--705145	65	2.1	69	86	8	196	24	21	17	36	1.95
705074--705427	76	4.6	76	78	8	353	24	22	12	40	1.89
705404--705487	44	1.9	44	92	0	141	17	25	14	42	1.87
708776--708829	28	1.9	28	85	7	74	27	29	12	29	1.94
708780--708936	81	1.9	82	81	8	187	25	26	12	35	1.92
714072--714127	19	2.9	19	89	2	85	32	14	12	41	1.83
717841--717896	19	2.8	20	83	2	78	30	14	14	41	1.85

Tables:   1   2   3   4   5

The End!