genome.fa.s319.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold319
Parameters: 2 7 7 80 10 50 1000
Length:  718924

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 537 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431901--431925	13	1.9	13	100	0	50	36	16	16	32	1.90
431990--432014	13	1.9	13	100	0	50	32	16	16	36	1.90
431968--432034	33	2.0	33	88	0	98	40	14	11	32	1.83
432946--432971	13	2.0	13	100	0	52	30	15	15	38	1.88
433010--433085	21	3.7	21	82	3	109	28	18	11	40	1.86
433030--433103	20	3.7	20	81	3	103	31	20	13	35	1.91
433010--433103	41	2.3	41	100	0	188	29	19	12	38	1.89
435554--435589	13	2.8	13	95	0	63	33	13	19	33	1.91
435578--435657	20	3.8	20	75	15	70	43	13	15	27	1.84
439505--439549	21	2.1	21	84	8	56	22	20	4	53	1.63
441764--441789	13	2.0	13	100	0	52	30	15	15	38	1.88
441828--441944	21	5.7	21	79	4	148	29	18	11	40	1.87
441848--441962	20	5.7	20	79	4	140	30	20	13	36	1.90
441828--441962	41	3.3	41	100	0	270	29	19	12	38	1.88
442565--442595	15	2.1	15	93	0	53	48	16	22	12	1.80
444676--444714	13	3.0	13	96	0	69	30	17	15	35	1.91
447250--447275	13	2.0	13	100	0	52	38	15	15	30	1.88
447232--447295	32	2.0	33	90	3	103	42	15	14	28	1.86
451390--451429	20	2.0	20	95	0	71	35	15	12	37	1.85
451388--451456	33	2.1	33	86	0	93	36	17	13	33	1.88
451486--451537	19	2.7	20	90	3	79	36	17	15	30	1.91
452016--452054	20	2.0	20	84	0	51	38	2	20	38	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452225--452253	6	4.8	6	100	0	58	51	31	0	17	1.45
452603--452646	21	2.1	21	83	8	54	70	4	4	20	1.23
453029--453061	9	3.7	9	88	12	50	72	0	3	24	0.98
454177--454397	85	2.6	86	73	6	216	44	15	22	17	1.86
454557--454701	42	3.5	42	73	12	136	32	11	34	22	1.89
454463--454829	84	4.4	84	79	7	300	35	11	30	21	1.90
454463--454806	167	2.0	169	80	6	387	36	11	30	21	1.89
459317--459436	49	2.5	49	86	1	161	33	21	21	23	1.97
459640--459680	21	2.0	21	85	9	57	39	12	9	39	1.76
459720--459790	20	3.5	21	81	7	67	42	15	12	29	1.84
459773--459863	39	2.5	34	80	16	119	35	17	19	27	1.95
459786--459863	39	2.0	39	97	0	147	34	17	20	26	1.95
459906--459958	10	5.0	10	77	18	54	22	28	9	39	1.85
459915--459973	23	2.5	24	77	5	75	25	27	8	38	1.84
460497--460563	37	1.9	35	88	11	102	32	11	25	29	1.92
460833--461145	48	6.9	47	71	14	244	29	17	26	26	1.98
460880--461040	39	3.9	39	76	13	169	26	20	27	26	1.99
460821--461086	87	3.1	87	92	0	424	28	18	25	27	1.98
461294--461518	34	6.8	35	80	11	199	35	14	29	20	1.92
461395--461483	27	3.0	28	74	14	81	32	14	32	20	1.93
461361--461483	62	2.0	61	95	1	219	34	13	31	20	1.92
461264--461518	130	2.0	130	82	6	311	34	14	31	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461498--461581	29	3.0	28	82	3	114	20	17	29	32	1.96
461327--461517	96	2.0	96	87	3	278	35	14	29	20	1.92
464925--464952	13	2.2	13	100	0	56	39	17	14	28	1.89
464984--465033	19	2.6	19	93	0	91	36	18	12	34	1.87
466422--466523	16	6.3	15	72	21	64	2	3	12	80	0.96
466423--466465	23	2.0	22	86	9	61	0	4	13	81	0.84
466504--466536	12	2.7	12	95	4	57	0	15	0	84	0.61
474508--474737	34	6.7	34	86	4	309	18	32	12	36	1.89
474504--474737	69	3.4	68	89	4	344	19	31	12	36	1.89
474503--474737	103	2.3	104	86	6	318	19	31	12	36	1.90
474705--474786	27	2.9	28	84	10	89	24	32	19	23	1.97
474725--474786	29	2.2	27	86	11	81	24	32	24	19	1.98
474947--475235	39	6.7	39	67	20	146	25	25	21	27	1.99
474977--475187	48	4.6	49	70	13	149	26	25	19	28	1.99
474846--475187	136	2.6	135	83	4	417	26	24	19	29	1.99
475026--475234	87	2.4	87	90	0	319	26	26	20	26	1.99
476066--476155	13	6.0	13	69	26	54	34	13	17	34	1.89
476065--476154	32	2.8	32	94	0	153	33	13	17	35	1.89
476079--476141	19	3.7	18	74	24	64	33	11	19	36	1.87
485604--485675	19	3.7	19	81	5	90	33	15	15	36	1.89
486003--486191	88	2.1	88	85	1	245	40	15	23	20	1.91
485992--486145	44	3.5	44	74	7	141	39	15	23	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
486208--486603	48	8.3	48	83	4	442	39	17	20	21	1.92
486208--486603	143	2.8	144	82	5	471	39	17	20	21	1.92
486565--486703	35	3.9	36	83	3	140	40	9	23	27	1.85
488712--488738	11	2.5	11	100	0	54	14	7	0	77	0.97
499855--499900	24	1.9	24	100	0	92	36	17	15	30	1.91
506714--507274	79	7.1	77	79	9	528	28	25	11	34	1.91
506730--507250	157	3.3	155	80	11	535	28	25	12	33	1.92
506695--507247	236	2.3	235	84	7	680	28	24	11	34	1.91
514219--514272	20	2.7	20	85	2	72	38	12	14	33	1.85
516081--516124	22	2.0	22	100	0	88	31	27	27	13	1.94
516809--517126	155	2.1	153	86	4	433	38	19	18	22	1.93
519834--519858	13	1.9	13	100	0	50	36	16	16	32	1.90
519814--519880	33	2.0	33	88	0	98	32	11	14	40	1.83
519921--519945	13	1.9	13	100	0	50	32	16	16	36	1.90
523135--523187	9	5.7	9	78	14	54	11	1	5	81	0.94
523176--523208	14	2.4	14	100	0	66	12	0	12	75	1.04
534248--534304	19	2.9	19	89	2	78	33	15	14	36	1.88
534903--534953	14	3.7	14	84	5	77	41	9	1	47	1.48
534903--534957	27	2.0	27	96	0	101	38	10	1	49	1.49
538189--538219	16	2.0	15	93	6	53	32	9	0	58	1.31
543870--543895	13	2.0	13	100	0	52	30	15	15	38	1.88
543850--543913	32	2.0	33	87	3	94	28	14	17	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544636--544693	29	2.0	29	96	0	107	46	12	6	34	1.68
546475--546513	13	3.0	13	88	0	51	38	12	15	33	1.85
552690--552715	13	2.0	13	100	0	52	30	15	15	38	1.88
552670--552733	32	2.0	33	87	3	94	28	14	17	40	1.88
552703--552740	19	2.0	19	89	0	58	28	13	21	36	1.91
557318--557353	16	2.2	16	90	0	54	61	0	2	36	1.11
559736--559770	16	2.1	17	89	5	54	62	25	5	5	1.40
560733--561636	156	5.8	155	80	5	878	22	17	22	36	1.95
560771--561578	312	2.6	309	83	5	966	22	17	22	37	1.94
561562--561703	67	2.1	67	98	0	275	17	18	26	38	1.93
561680--562270	156	3.8	157	78	7	573	22	17	20	38	1.93
561122--562172	536	2.0	536	85	3	1445	21	18	22	36	1.95
567787--567884	44	2.2	44	82	7	119	21	26	14	37	1.92
567818--567968	44	3.5	44	75	15	152	22	23	16	37	1.94
567826--567987	86	1.9	85	84	7	220	24	25	14	36	1.93
568110--568260	42	3.6	41	79	7	153	19	27	17	35	1.94
568084--568275	84	2.3	85	77	5	203	17	28	15	38	1.91
568350--569052	43	16.3	43	82	0	690	17	30	17	35	1.92
568350--569052	86	8.2	86	82	1	766	17	30	17	35	1.92
569211--569451	127	1.9	127	81	3	297	21	29	16	32	1.95
570067--570229	85	1.9	84	82	6	204	19	21	14	44	1.86
581159--581219	32	2.0	32	83	6	81	26	22	9	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
581242--581916	62	11.2	62	79	7	629	25	22	18	33	1.96
581271--581917	299	2.2	295	82	6	748	25	21	18	34	1.96
585488--585598	37	3.0	37	81	0	123	34	11	19	34	1.88
585660--585774	37	3.1	35	76	8	113	26	10	21	41	1.85
585631--585774	73	2.0	74	83	1	182	28	13	20	37	1.90
585837--585959	37	3.3	37	78	10	135	27	9	22	39	1.86
585815--585964	74	2.0	74	79	5	160	31	10	20	38	1.85
591329--591414	40	2.2	40	97	0	163	33	31	16	18	1.93
591691--591729	21	1.9	21	94	5	71	46	10	23	20	1.81
593656--593737	31	2.6	31	72	14	78	19	28	25	26	1.99

Tables:   1   2   3   4   5