genome.fa.s325.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold325
Parameters: 2 7 7 80 10 50 1000
Length:  667817

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 492 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193792--193852	6	10.0	6	91	3	77	27	21	32	18	1.96
194150--194196	15	3.1	15	81	9	60	55	0	0	44	0.99
194184--194236	17	3.4	17	77	17	69	39	0	0	60	0.97
194224--194285	25	2.5	25	79	7	65	30	1	0	67	1.00
194690--194733	24	1.9	23	86	9	63	40	6	2	50	1.42
196338--196382	16	2.7	18	74	22	53	51	0	0	48	1.00
198972--199004	15	2.2	15	89	10	50	48	3	6	42	1.43
201233--201286	23	2.3	23	75	6	56	50	1	0	48	1.11
202450--202495	24	1.9	24	95	0	83	45	28	6	19	1.75
202492--202553	28	2.2	27	91	8	106	56	20	4	17	1.59
204458--204503	21	2.1	22	84	4	58	19	30	19	30	1.97
207060--207127	28	2.4	28	81	16	86	55	16	5	22	1.62
208158--208212	29	1.9	28	88	3	83	54	1	0	43	1.10
208158--208203	13	3.3	13	80	16	56	60	2	0	36	1.09
208253--208329	32	2.4	31	78	10	75	54	7	1	36	1.38
208398--208475	3	27.0	3	85	7	99	37	0	1	61	1.04
208607--208649	13	3.3	12	81	9	50	44	0	2	53	1.13
208806--208873	31	2.2	31	91	0	109	47	4	4	44	1.43
208837--208916	40	2.0	41	87	4	119	43	5	3	47	1.43
209037--209075	19	2.2	18	86	9	53	38	2	0	58	1.12
209305--209365	27	2.2	28	82	8	81	45	0	0	54	1.00
209322--209351	15	1.9	16	93	6	53	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209693--209727	13	2.6	14	95	4	63	68	0	0	31	0.90
209710--209794	17	4.9	16	68	24	57	68	1	1	29	1.05
209712--209759	25	1.9	25	87	8	71	68	2	0	29	1.01
210572--210602	4	7.8	4	100	0	62	77	0	0	22	0.77
210919--210975	24	2.4	24	87	0	87	43	12	17	26	1.84
211977--212006	2	15.0	2	92	0	51	46	0	0	53	1.00
213365--213400	2	18.0	2	100	0	72	50	0	0	50	1.00
215946--215986	22	1.9	21	85	5	55	36	2	14	46	1.58
216079--216112	16	2.2	15	89	5	50	55	2	0	41	1.15
216145--216205	28	2.1	30	82	11	74	59	0	1	39	1.08
222581--222656	14	5.8	13	72	21	61	46	1	0	52	1.08
222584--222647	23	2.9	21	84	11	74	46	1	0	51	1.10
222642--222715	31	2.4	31	78	15	89	48	0	0	51	1.00
230760--230834	20	3.8	20	71	13	73	38	12	16	33	1.85
232303--232361	26	2.5	24	79	15	68	61	3	1	33	1.23
232635--232661	2	13.5	2	100	0	54	51	0	0	48	1.00
240146--240194	18	2.5	19	87	9	64	34	18	10	36	1.85
241794--242027	15	15.1	15	74	17	64	21	20	8	49	1.75
241853--242015	5	32.4	5	88	1	191	20	19	7	51	1.72
242621--242694	37	2.1	37	89	5	116	50	13	33	2	1.56
243358--243388	16	2.0	15	93	6	53	77	3	0	19	0.90
255893--256978	42	25.6	41	79	6	1006	10	29	19	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255893--256974	84	12.8	84	80	3	1137	10	29	19	39	1.86
255895--256974	126	8.5	126	86	2	1311	10	29	19	40	1.86
257511--257798	15	19.1	15	76	13	67	21	20	9	48	1.77
257573--257788	5	43.2	5	87	0	225	21	20	9	48	1.77
257573--257786	15	14.6	15	88	4	276	21	20	8	49	1.76
257570--257798	20	11.6	20	88	0	255	21	20	9	49	1.76
258390--258466	40	1.9	39	89	2	118	51	12	32	2	1.54
259126--259156	16	2.0	15	93	6	53	77	3	0	19	0.90
264856--265003	50	3.0	48	87	5	206	25	10	10	54	1.66
267197--267261	32	2.1	32	85	2	87	44	13	10	30	1.78
267220--267285	16	4.1	16	80	0	60	39	15	12	33	1.84
267214--267274	32	1.9	32	86	0	86	40	13	9	36	1.77
268477--268544	27	2.5	28	83	9	86	36	13	7	42	1.72
269243--269287	13	3.4	13	90	6	72	82	2	15	0	0.77
269241--269297	12	4.6	12	75	20	55	78	1	17	1	0.91
276561--276599	20	1.9	21	94	5	71	35	12	20	30	1.90
278320--278357	18	2.2	18	85	4	51	21	7	7	63	1.47
279132--279185	19	2.8	20	91	2	83	29	14	18	37	1.91
279231--279260	13	2.3	13	100	0	60	33	16	13	36	1.88
279214--279282	33	2.1	32	84	10	86	31	13	17	37	1.88
285536--285697	57	2.8	57	84	5	193	27	9	14	48	1.75
295524--295554	16	1.9	16	100	0	62	77	6	0	16	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297321--297369	22	2.2	23	89	7	75	44	2	6	46	1.39
297321--297379	23	2.6	22	84	10	66	49	1	6	42	1.39
297367--297415	25	2.0	25	92	8	82	59	10	4	26	1.48
297569--297598	15	2.1	14	93	6	51	63	0	0	36	0.95
298496--298533	9	3.8	10	89	10	51	57	0	0	42	0.98
306007--306048	10	4.2	11	80	20	56	61	0	0	38	0.96
307838--307883	21	2.1	23	88	8	69	26	17	2	54	1.54
308916--308952	3	12.3	3	100	0	74	32	0	0	67	0.91
309566--309642	25	3.0	25	69	1	64	46	0	1	51	1.09
310370--310402	15	2.1	16	88	5	50	57	3	0	39	1.14
310599--310637	20	1.9	21	85	15	55	61	0	0	38	0.96
311187--311238	20	2.5	22	78	9	63	51	0	0	48	1.00
312262--312327	22	3.0	21	82	10	80	42	0	0	57	0.98
312288--312333	22	2.1	22	87	0	65	45	0	2	52	1.13
318899--318942	22	2.0	22	86	0	61	38	2	6	52	1.41
319536--319588	21	2.5	20	85	11	63	15	16	1	66	1.35
319435--319904	165	2.9	163	80	9	451	31	10	8	49	1.67
319616--320031	164	2.5	164	81	5	468	33	10	7	47	1.68
319624--320061	165	2.7	163	82	5	465	33	10	7	48	1.65
320545--320570	11	2.4	11	100	0	52	84	0	15	0	0.62
321716--322170	142	3.2	142	89	3	677	36	9	10	42	1.73
322294--322591	155	1.9	155	86	0	416	22	14	21	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322286--322630	155	2.2	155	82	2	406	23	14	20	41	1.89
325477--325506	13	2.3	13	94	0	51	36	10	16	36	1.82
325456--325520	33	2.0	33	88	11	98	35	15	15	33	1.89
325552--325609	19	3.0	20	82	7	75	34	18	15	31	1.93
325926--326042	19	6.7	19	73	22	114	36	16	15	31	1.90
325946--326052	13	9.9	12	66	31	73	36	14	15	32	1.89
325948--326075	32	4.0	32	92	4	206	37	14	15	32	1.88
325574--326759	438	2.6	438	94	4	2014	35	14	15	34	1.89
326364--326512	19	8.7	19	73	25	145	36	16	15	30	1.90
326384--326522	13	12.9	12	68	31	102	36	15	15	31	1.90
326386--326545	32	5.0	32	96	3	279	37	15	15	31	1.89
328858--328907	21	2.4	21	83	9	59	48	0	20	32	1.50
328865--328907	21	2.0	22	86	4	61	51	0	20	27	1.48
335085--335147	33	1.9	32	87	12	92	34	15	14	34	1.88
335179--335236	19	3.0	20	85	7	84	34	17	15	32	1.91
338369--338435	33	2.0	33	88	0	98	34	11	13	40	1.81
338389--338413	13	1.9	13	100	0	50	36	16	16	32	1.90
338478--338505	13	2.2	13	100	0	56	28	14	17	39	1.89
338491--338639	52	2.9	50	87	6	208	32	16	17	32	1.93
344087--344226	35	4.0	35	85	0	165	23	22	12	42	1.87
344192--344436	47	5.2	47	81	0	258	21	22	17	38	1.93
344209--344467	94	2.7	94	82	1	286	20	20	17	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344192--344499	94	3.3	94	80	1	242	21	22	15	40	1.91
344188--344499	141	2.2	141	82	4	378	21	22	16	40	1.91
345989--346413	165	2.6	163	79	9	443	33	10	7	49	1.64
346898--346939	22	1.9	22	85	0	57	78	0	21	0	0.75
346894--346945	14	3.5	15	77	15	54	73	0	26	0	0.84
348043--348352	142	2.2	142	90	2	489	34	8	11	45	1.71
348528--348884	155	2.3	155	78	6	384	26	15	19	39	1.91
355533--355613	33	2.5	32	86	9	110	37	12	20	29	1.90
355553--355621	33	2.1	33	94	0	120	36	10	21	31	1.87
355688--355745	13	4.0	13	74	23	53	32	17	15	34	1.91

Tables:   1   2   3   4   5