genome.fa.s325.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold325
Parameters: 2 7 7 80 10 50 1000
Length:  667817

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 492 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355702--355764	19	3.6	19	74	24	75	33	19	14	33	1.91
355627--355766	32	4.4	32	78	7	169	30	17	16	35	1.92
360621--360832	66	3.2	66	75	5	192	34	25	11	29	1.90
360812--360890	33	2.4	32	81	6	88	44	29	3	22	1.70
362568--362654	31	2.8	31	80	3	86	60	3	5	29	1.36
369910--370235	165	2.0	164	79	9	351	54	9	11	24	1.66
370695--370751	13	3.9	13	76	24	60	35	14	17	33	1.90
370708--370770	19	3.7	18	76	24	73	33	12	17	36	1.88
370694--370778	32	2.7	32	98	0	161	32	12	17	36	1.88
370823--370847	13	1.9	13	100	0	50	32	16	16	36	1.90
370856--370984	52	2.5	52	97	0	240	36	18	17	27	1.93
371828--371880	21	2.5	21	100	0	106	18	15	16	49	1.80
374571--374886	128	2.5	128	82	4	309	33	18	27	19	1.96
374612--374770	85	1.9	85	82	2	203	33	19	27	20	1.96
374739--374952	85	2.5	84	82	4	270	35	19	27	18	1.95
374457--374957	43	11.8	43	72	5	257	35	18	26	18	1.95
375840--375884	15	3.0	15	96	0	81	35	26	11	26	1.90
376606--377230	79	8.0	77	80	10	673	30	14	27	26	1.95
376606--377230	158	4.0	156	89	6	885	30	14	27	26	1.95
377182--377284	27	3.8	27	88	3	136	25	19	33	22	1.97
377260--377398	52	2.7	53	86	8	198	31	10	27	30	1.89
379754--379779	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379766--379807	21	2.0	21	95	0	75	28	16	9	45	1.79
379824--379905	13	5.5	13	70	25	56	35	15	12	36	1.85
379824--379924	32	3.2	31	91	2	159	35	16	11	35	1.86
379832--379926	19	5.8	18	71	25	86	36	16	11	34	1.85
380151--380329	78	2.3	79	88	4	256	26	11	30	32	1.91
380988--381094	55	1.9	55	92	0	178	23	21	10	44	1.82
381094--381132	19	2.0	20	85	5	53	17	5	0	76	0.96
382940--382990	19	2.6	19	81	3	57	33	13	15	37	1.87
389102--389126	13	1.9	13	100	0	50	32	16	16	36	1.90
392714--392764	19	2.6	20	93	3	86	27	13	15	43	1.85
395144--395184	4	11.0	4	80	15	52	73	0	0	26	0.84
395144--395204	25	2.4	25	86	5	70	72	0	3	24	1.00
395243--395350	29	3.7	29	83	1	135	25	21	11	42	1.85
395301--395398	43	2.3	44	85	3	128	25	20	10	43	1.83
408807--408878	32	2.2	32	82	7	92	79	1	11	8	1.00
408809--408876	7	10.8	6	78	13	50	79	1	11	7	0.99
410208--411028	42	19.6	42	70	7	286	18	26	17	36	1.94
410243--410951	84	8.5	83	72	7	398	18	26	18	36	1.94
410212--410461	125	2.0	126	81	3	299	20	26	18	34	1.96
410627--411026	126	3.2	124	73	7	333	17	28	18	36	1.94
410292--411028	168	4.4	167	76	5	569	18	27	17	36	1.94
411563--411609	4	12.5	4	82	13	64	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411560--411611	25	2.0	26	92	3	88	76	0	0	23	0.78
411555--411612	25	2.3	24	82	8	80	74	0	0	25	0.82
411676--411776	29	3.4	29	83	1	121	24	19	11	43	1.85
411728--411824	43	2.2	44	85	3	126	25	19	10	44	1.82
420469--420524	20	2.8	19	89	5	76	39	14	16	30	1.88
420583--420608	13	2.0	13	100	0	52	38	15	15	30	1.88
422825--422869	21	2.1	21	84	8	56	53	4	20	22	1.63
424673--424703	15	2.1	15	93	0	53	48	16	22	12	1.80
426720--426799	20	3.8	20	73	15	70	27	15	13	43	1.84
426785--426823	13	3.0	13	88	0	60	35	17	10	35	1.84
426945--426991	21	2.3	21	79	20	55	34	19	4	42	1.70
426947--426989	20	2.2	19	84	16	52	32	18	4	44	1.71
429366--429391	13	2.0	13	100	0	52	38	15	15	30	1.88
439452--439508	22	2.5	22	80	2	60	5	21	0	73	1.02
439469--439506	11	3.3	12	85	10	53	0	26	0	73	0.83
439951--440318	183	2.0	180	87	2	522	46	10	14	28	1.77
440303--440746	166	2.7	163	84	8	553	54	7	10	27	1.62
442886--442935	24	2.1	24	92	3	84	54	0	2	44	1.11
442865--442958	33	2.9	31	69	16	75	56	0	2	41	1.11
444683--444764	43	2.0	42	83	13	107	54	0	0	45	0.99
444789--444873	31	2.6	33	76	14	86	54	2	3	40	1.31
444864--444928	26	2.4	26	82	10	69	66	1	0	32	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444877--444912	16	2.1	17	90	10	56	69	0	0	30	0.89
444877--444913	17	2.1	18	90	5	58	70	0	0	29	0.88
444864--444941	41	1.9	41	87	10	115	66	1	0	32	1.00
445085--445135	6	8.8	6	80	8	52	43	0	0	56	0.99
445376--445437	25	2.5	25	84	10	74	54	0	1	43	1.09
448604--448631	2	14.0	2	100	0	56	50	50	0	0	1.00
448631--448661	2	15.5	2	93	0	53	51	3	0	45	1.17
450380--450461	33	2.5	33	97	0	155	39	17	12	31	1.86
450414--450438	13	1.9	13	100	0	50	32	16	16	36	1.90
450394--450458	20	3.6	20	71	26	72	41	18	10	29	1.84
452490--452654	84	2.0	84	81	2	197	52	3	18	25	1.60
454225--454259	17	2.1	17	94	0	61	48	25	5	20	1.71
455001--455028	14	2.0	14	100	0	56	21	0	42	35	1.53
456190--456214	13	1.9	13	100	0	50	32	16	16	36	1.90
456170--456237	33	2.1	33	89	8	104	36	16	14	32	1.89
461620--461662	21	2.0	22	86	4	61	58	0	0	41	0.98
462848--462900	22	2.5	22	84	6	74	54	5	0	39	1.24
462903--462933	13	2.4	13	94	0	53	77	0	0	22	0.77
463814--463845	16	1.9	17	93	6	57	43	0	3	53	1.16
463838--463902	17	3.9	17	76	8	71	35	0	4	60	1.18
463836--463900	33	2.0	33	87	6	96	35	0	4	60	1.18
463887--463913	12	2.2	12	100	0	54	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463842--463918	33	2.4	32	75	18	79	36	0	3	59	1.16
465176--465219	19	2.2	20	84	12	54	59	0	0	40	0.98
465209--465242	17	1.9	18	94	5	61	44	5	2	47	1.42
465334--465375	16	2.6	16	92	3	66	61	0	0	38	0.96
468202--468233	3	10.7	3	100	0	64	31	0	0	68	0.90
468552--468581	10	3.0	10	90	0	51	16	0	13	70	1.18
468535--468631	48	2.0	48	86	7	135	24	3	14	57	1.51
468661--468712	17	2.8	19	80	16	65	57	0	0	42	0.98
468674--468715	19	2.4	17	88	11	66	59	0	0	40	0.97
468720--468791	9	8.1	9	77	14	69	41	0	0	58	0.98
468722--468788	33	2.0	35	91	5	111	41	0	0	58	0.98
468734--468802	24	2.8	25	79	12	72	44	0	0	55	0.99
468718--468803	38	2.4	37	84	13	108	45	0	0	54	0.99
472137--472168	2	16.5	2	93	6	57	50	0	0	50	1.00
472572--472608	14	2.8	14	84	8	51	54	0	2	43	1.14
474224--474303	2	42.0	2	80	9	87	55	0	0	45	0.99
474267--474421	19	7.5	21	67	21	78	57	0	0	41	1.03
474246--474423	60	2.9	62	73	18	172	56	0	0	42	1.03
474282--474390	33	3.2	33	79	11	105	55	0	0	44	0.99
474320--474374	18	3.1	18	75	21	53	54	0	0	45	0.99
474345--474424	8	10.1	8	69	17	60	57	0	1	41	1.07
478110--478165	27	2.0	28	82	3	69	21	8	5	64	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
486720--486756	2	18.5	2	100	0	74	48	0	0	51	1.00
488318--488380	21	2.8	23	77	22	71	55	0	0	44	0.99
488319--488390	25	3.0	25	84	10	96	56	0	0	43	0.99
488329--488383	20	2.7	22	83	13	73	58	0	0	41	0.98
488328--488398	28	2.7	25	81	12	79	59	0	0	40	0.98
489519--489581	32	2.0	32	84	6	83	41	12	15	30	1.85
489662--489724	8	8.0	8	75	3	56	39	0	1	58	1.07
489702--489742	19	2.2	19	90	0	64	46	0	4	48	1.23
489714--489768	29	2.0	29	86	10	80	45	0	1	52	1.11
489997--490037	19	2.2	19	90	0	64	48	4	0	46	1.23

Tables:   1   2   3   4   5