genome.fa.s325.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold325
Parameters: 2 7 7 80 10 50 1000
Length:  667817

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 492 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
490110--490170	32	1.9	32	82	0	77	32	9	19	37	1.85
490300--490379	29	2.8	28	81	9	81	45	2	5	47	1.38
491024--491065	7	5.6	7	86	13	57	80	0	7	11	0.88
494825--494887	26	2.4	26	89	0	90	22	14	36	26	1.92
494846--495104	103	2.5	102	82	7	303	33	12	26	27	1.92
497516--497578	19	3.2	19	77	20	74	34	14	6	44	1.70
497530--497574	22	2.0	22	91	0	72	35	13	4	46	1.63
498487--499028	52	10.5	52	77	4	328	32	15	24	28	1.95
498487--498891	154	2.6	154	79	3	368	31	15	24	28	1.96
499274--499451	31	5.7	31	77	7	139	33	19	20	26	1.97
499258--499399	62	2.3	63	77	3	153	33	17	20	28	1.95
499387--499455	32	2.1	34	78	10	81	39	17	23	20	1.92
499503--499610	28	3.8	29	77	4	94	27	13	26	31	1.94
499562--499727	29	5.8	28	77	10	131	28	17	28	25	1.98
499570--499727	58	2.7	59	77	9	171	29	17	28	24	1.97
499819--499916	13	7.6	12	68	21	56	31	16	17	34	1.92
500741--500809	32	2.1	33	86	2	95	40	10	14	34	1.80
506356--506565	103	2.0	103	87	1	305	40	13	18	26	1.88
509866--509899	15	2.3	15	94	0	59	50	26	14	8	1.72
513069--513733	189	3.5	189	88	1	902	31	14	21	32	1.94
524919--524956	2	19.0	2	100	0	76	50	0	0	50	1.00
526929--527009	16	5.0	16	73	21	71	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526928--527007	33	2.5	33	86	10	94	58	0	0	41	0.98
529325--529396	18	4.3	17	72	21	53	40	0	0	59	0.97
529327--529395	32	2.1	34	89	5	106	40	0	0	59	0.97
529337--529385	14	3.2	14	74	20	53	46	0	0	53	1.00
530767--530814	20	2.8	17	80	20	55	43	0	0	56	0.99
530906--531010	27	3.9	28	76	9	87	47	0	1	49	1.18
531379--531444	23	2.8	23	76	17	64	51	0	0	48	1.00
531420--531479	21	3.0	20	77	15	63	53	0	0	46	1.00
531444--531478	16	2.1	18	89	10	56	54	0	0	45	0.99
532312--532453	47	3.0	47	100	0	284	21	19	16	42	1.89
540260--540297	18	2.1	19	90	5	60	47	5	10	36	1.61
541910--541940	14	2.2	14	100	0	62	58	12	6	22	1.58
542801--542844	21	2.1	21	83	8	54	65	0	20	13	1.26
554767--554807	2	20.5	2	100	0	82	48	0	0	51	1.00
555300--555387	43	2.0	43	97	0	167	40	13	20	25	1.89
558163--558689	70	7.4	70	79	7	474	25	19	13	41	1.88
558337--558455	34	3.4	35	70	14	120	24	18	11	45	1.83
559235--559444	112	1.9	112	82	2	269	28	13	23	33	1.93
561144--561191	22	2.2	22	81	3	53	33	6	6	54	1.51
561864--562104	80	3.0	79	78	4	236	27	25	11	34	1.91
561871--562142	80	3.4	80	77	3	192	27	24	10	37	1.89
565591--565628	19	2.0	19	100	0	76	52	15	5	26	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567313--567339	2	13.5	2	100	0	54	51	48	0	0	1.00
568832--568888	26	2.3	24	78	6	60	29	19	1	49	1.58
571227--571316	15	6.3	15	71	19	66	52	3	0	44	1.17
571231--571312	43	1.9	43	85	5	112	52	3	0	43	1.18
571762--571824	33	1.9	32	81	9	74	63	0	0	36	0.95
571800--571834	9	4.1	9	85	14	56	74	0	0	25	0.82
571802--571832	16	1.9	16	100	0	62	77	0	0	22	0.77
572239--572264	13	2.0	13	100	0	52	53	0	7	38	1.30
572260--572304	21	2.1	21	83	0	54	64	0	0	35	0.94
572907--572950	22	2.0	22	86	8	63	59	0	0	40	0.98
573152--573192	2	20.5	2	100	0	82	51	0	0	48	1.00
574571--574605	18	2.0	18	88	5	54	45	0	0	54	0.99
574720--574787	18	3.6	18	73	19	59	48	0	0	51	1.00
574758--574812	25	2.2	24	87	9	76	50	0	0	49	1.00
575387--575421	17	2.0	17	88	5	52	60	0	2	37	1.12
575501--575610	17	6.2	17	70	15	55	42	2	1	52	1.26
575565--575614	17	2.9	17	85	8	66	46	4	0	50	1.20
575787--575888	53	1.9	53	83	0	132	52	5	1	39	1.37
576316--576340	12	2.1	12	100	0	50	36	0	0	64	0.94
577213--577305	25	3.7	24	72	25	68	39	0	0	60	0.97
577234--577305	32	2.3	31	81	13	94	41	0	0	58	0.98
577232--577280	18	2.6	20	75	18	52	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
577243--577298	17	3.4	17	72	18	55	42	0	0	57	0.99
577213--577357	12	11.7	12	66	23	61	39	0	0	59	1.08
577317--577363	24	2.0	23	87	4	67	31	0	0	68	0.90
577842--577892	22	2.3	22	86	6	68	41	1	5	50	1.37
579598--579643	22	2.1	22	83	0	56	58	2	0	39	1.10
583166--583423	78	3.3	78	75	11	192	35	19	10	34	1.87
583213--583436	78	2.9	78	81	2	254	36	19	11	32	1.87
583585--583782	58	3.4	57	75	9	170	50	14	8	26	1.71
587300--587601	29	10.4	29	82	7	328	42	2	19	36	1.64
587301--587601	87	3.5	87	83	7	362	42	2	19	36	1.64
589184--589223	21	2.0	20	95	5	71	55	0	15	30	1.41
592831--592876	20	2.2	21	92	3	76	41	6	19	32	1.77
593041--593092	20	2.6	20	87	0	77	36	11	9	42	1.74
596353--596392	2	20.0	2	84	0	53	50	2	0	47	1.14
597050--597131	36	2.2	38	82	8	98	40	1	2	56	1.20
598317--598351	2	17.5	2	93	0	61	51	0	0	48	1.00
605221--605273	27	2.0	26	85	3	70	22	11	33	32	1.90
605177--605375	103	1.9	103	83	2	256	37	10	22	29	1.88
611905--612309	156	2.6	156	81	2	429	36	12	22	28	1.91
611903--612311	52	7.9	51	77	5	354	36	12	22	28	1.91
612541--612670	31	4.1	31	85	5	172	26	21	26	25	1.99
612551--612670	63	1.9	63	87	1	179	25	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612725--613200	52	9.0	52	74	7	289	35	14	22	27	1.93
612725--612946	53	4.3	52	78	6	236	36	13	22	27	1.92
613710--613800	29	3.1	28	82	6	103	26	12	34	27	1.92
613726--613813	29	3.0	29	85	3	115	27	13	32	26	1.94
613773--613857	44	1.9	44	85	4	118	29	16	30	23	1.96
613837--614088	29	8.6	29	79	5	211	28	14	28	27	1.95
613837--614081	88	2.8	87	81	7	239	28	14	28	28	1.95
613837--614062	117	1.9	117	85	4	312	28	15	27	27	1.97
613837--614114	59	4.8	57	78	6	227	29	14	28	28	1.95
614729--614791	28	2.2	28	88	0	90	23	23	20	31	1.98
620850--621065	103	2.1	102	83	6	276	34	12	24	28	1.91
621358--621401	19	2.3	19	96	0	79	65	18	0	15	1.27
623172--623216	23	2.0	23	90	0	72	24	20	31	24	1.98
625629--625676	19	2.5	19	76	6	53	45	0	12	41	1.42
627082--627116	19	1.9	17	88	11	52	57	0	0	42	0.99
630795--630843	16	3.0	16	80	11	55	51	18	6	24	1.69
631036--631079	22	2.0	22	95	0	79	47	0	6	45	1.29
632171--632303	62	2.1	62	86	2	178	42	5	18	33	1.73
632596--632629	18	1.9	18	88	5	52	50	2	2	44	1.32
634997--635031	18	1.9	18	94	0	61	25	2	42	28	1.69
635841--635892	12	4.2	13	79	18	65	51	0	0	48	1.00
635801--635868	20	3.6	18	73	13	57	48	4	0	47	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
636317--636376	26	2.3	26	85	5	77	48	1	0	50	1.11
637628--637652	12	2.1	12	100	0	50	28	24	48	0	1.52
638963--639004	16	2.7	16	88	3	68	76	2	0	21	0.90
641382--641422	19	2.2	19	95	0	73	36	24	26	12	1.91
645045--645083	20	1.9	21	94	5	71	64	5	0	30	1.15
645361--645396	18	2.0	18	100	0	72	27	11	5	55	1.57
661184--661472	52	5.5	53	70	14	197	33	14	24	26	1.94
661247--661314	28	2.4	27	88	9	93	26	19	30	23	1.98
661446--661527	27	3.0	28	82	10	98	26	21	29	21	1.99
661175--661587	212	1.9	213	94	2	722	32	13	25	28	1.94

Tables:   1   2   3   4   5