genome.fa.s337.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold337
Parameters: 2 7 7 80 10 50 1000
Length:  762055

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 532 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365176--365224	16	3.0	16	90	3	71	75	0	16	8	1.03
366824--367150	178	1.8	178	84	1	440	29	29	13	28	1.94
366824--367265	89	4.9	89	80	6	378	28	28	14	28	1.95
367110--367317	92	2.2	92	94	0	362	27	27	12	31	1.93
373010--373127	52	2.3	52	96	0	218	31	16	17	33	1.93
373201--373266	33	2.0	33	85	2	89	37	13	10	37	1.80
373222--373246	13	1.9	13	100	0	50	32	16	16	36	1.90
375231--375287	21	2.7	21	97	0	105	33	10	19	36	1.86
375418--375443	13	2.0	13	100	0	52	30	15	15	38	1.88
375398--375464	33	2.0	33	88	0	98	25	14	16	43	1.86
377178--377213	13	2.7	13	86	4	54	86	11	2	0	0.68
378195--378982	55	14.3	55	92	4	1179	28	30	20	20	1.98
379569--379625	21	2.7	21	97	0	105	33	10	19	36	1.86
379681--379748	19	3.9	19	78	21	85	35	11	14	38	1.83
379702--379726	13	1.9	13	100	0	50	36	16	16	32	1.90
379683--379745	32	2.0	32	96	0	117	34	12	15	36	1.86
379788--379813	13	2.0	13	100	0	52	30	15	15	38	1.88
379768--379834	33	2.0	33	88	0	98	25	14	16	43	1.86
382270--382439	52	3.3	51	79	12	186	29	24	12	32	1.93
382423--382499	28	2.8	28	87	0	100	23	33	19	23	1.97
382577--382654	27	2.9	27	100	0	156	25	33	19	21	1.97
382662--382831	52	3.3	51	80	9	193	29	24	12	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382815--382891	28	2.8	28	88	4	102	23	32	19	24	1.97
382925--382978	28	1.9	28	88	7	83	24	27	16	31	1.96
384563--384618	20	2.7	21	75	5	60	30	16	12	41	1.85
385212--385273	13	5.0	13	75	16	51	45	4	3	46	1.40
385213--385267	2	28.0	2	85	3	76	47	3	1	47	1.30
385353--385396	18	2.4	19	88	11	65	52	0	0	47	1.00
385599--385629	16	2.0	16	93	6	55	48	12	6	32	1.67
388976--389027	22	2.4	22	74	6	52	53	1	3	40	1.30
389418--389484	37	1.9	35	88	11	102	29	25	11	32	1.92
389922--389947	13	2.0	13	100	0	52	30	15	15	38	1.88
399648--399870	51	4.4	50	77	6	216	34	9	26	30	1.88
400507--400574	19	3.9	18	76	23	83	35	11	16	36	1.85
400528--400552	13	1.9	13	100	0	50	36	16	16	32	1.90
400509--400571	32	2.0	32	96	0	117	34	12	17	34	1.88
400613--400638	13	2.0	13	100	0	52	30	15	15	38	1.88
400593--400659	34	2.0	33	91	2	107	25	16	13	44	1.84
403026--403392	51	7.0	51	72	10	242	29	26	11	31	1.92
403376--403452	28	2.8	28	82	7	77	24	33	18	23	1.96
403007--403500	262	1.9	261	92	1	837	28	27	12	31	1.93
403406--403610	79	2.6	79	79	1	205	23	31	16	28	1.96
404628--404680	20	2.6	21	81	3	63	39	13	16	30	1.87
412790--412853	31	2.1	31	96	0	119	40	7	21	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413424--413450	13	2.1	13	100	0	54	29	18	14	37	1.91
413504--413571	33	2.1	32	86	2	91	35	14	14	35	1.87
416779--416852	20	3.7	19	87	7	103	41	13	16	28	1.86
417764--417939	51	3.7	49	70	18	156	44	10	14	29	1.79
417812--417983	20	8.1	20	68	17	87	41	12	15	30	1.84
417814--417983	40	4.5	39	68	17	117	41	12	15	30	1.84
417764--417938	91	1.9	91	89	0	269	45	10	14	29	1.79
417780--417986	91	2.3	91	80	3	240	44	12	14	28	1.81
419593--419634	3	14.0	3	94	0	75	35	0	0	64	0.94
420948--420990	22	2.0	21	86	4	59	39	23	11	25	1.88
421147--421197	15	3.3	15	80	2	57	47	39	3	9	1.55
423895--423940	17	2.6	18	83	10	51	36	0	6	56	1.25
425785--425810	13	2.0	13	100	0	52	38	15	15	30	1.88
429871--429901	15	2.1	15	93	0	53	48	16	22	12	1.80
431982--432019	13	2.9	13	96	0	67	34	18	15	31	1.92
432130--432175	21	2.2	20	81	11	58	32	19	4	43	1.71
434533--434558	13	2.0	13	100	0	52	38	15	15	30	1.88
434515--434578	32	2.0	33	90	3	103	42	15	14	28	1.86
435657--435711	22	2.5	22	72	3	56	67	9	14	9	1.42
439338--439362	13	1.9	13	100	0	50	36	16	16	32	1.90
439318--439383	32	2.0	33	91	2	107	33	12	19	34	1.89
439457--439585	52	2.5	52	92	0	213	36	18	17	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452614--452710	9	10.8	9	77	11	85	85	9	3	2	0.78
452612--452701	15	5.9	14	79	18	92	86	7	3	2	0.75
452612--452698	24	3.7	22	79	11	102	87	6	3	2	0.73
452612--452698	1	87.0	1	74	0	75	87	6	3	2	0.73
454148--454311	30	5.3	29	84	7	148	28	31	17	23	1.97
454154--454551	32	12.5	33	87	4	446	28	32	19	20	1.97
454213--454551	97	3.5	98	89	4	510	28	33	19	18	1.96
454213--454551	129	2.6	130	92	3	576	28	33	19	18	1.96
454606--454829	43	5.1	43	85	6	295	26	24	18	30	1.98
454626--454694	21	3.2	20	67	25	52	28	27	15	27	1.96
454606--454875	92	3.0	90	87	4	352	25	24	19	30	1.98
454556--454829	135	2.0	135	93	0	467	25	25	17	31	1.97
455415--455439	13	1.9	13	100	0	50	36	16	16	32	1.90
455395--455460	32	2.0	33	94	2	116	33	12	18	36	1.88
455501--455525	13	1.9	13	100	0	50	32	16	16	36	1.90
455534--455662	52	2.5	52	93	0	213	35	18	17	28	1.93
458760--458835	28	2.8	28	83	2	100	27	17	30	25	1.97
458684--458882	106	1.9	106	86	4	285	33	14	25	27	1.94
458813--458930	51	2.3	50	85	7	175	34	8	25	31	1.86
459080--459189	50	2.2	49	80	6	130	34	11	24	29	1.91
458807--459223	130	3.2	129	85	2	559	35	11	23	29	1.90
461500--461555	21	2.7	21	100	0	112	32	14	21	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462072--462232	87	1.8	89	82	2	209	45	11	22	19	1.83
462104--462232	42	2.9	45	75	11	140	46	11	24	17	1.81
462255--462465	61	3.4	62	88	3	327	27	20	27	24	1.99
462315--462619	163	1.9	161	83	8	404	28	19	27	24	1.99
462479--462887	61	6.7	60	82	5	437	27	19	26	25	1.99
462479--462899	122	3.5	122	84	2	492	28	19	26	26	1.99
464064--464101	18	2.1	19	85	14	53	2	13	10	73	1.19
469051--469227	79	2.2	79	85	0	228	30	16	27	24	1.97
469152--469326	51	3.5	50	80	8	196	34	11	25	29	1.91
469094--469437	179	1.9	179	89	1	537	34	12	25	27	1.92
469338--469456	51	2.3	51	91	0	184	31	14	26	26	1.95
469209--469646	130	3.4	129	88	2	621	34	12	25	28	1.92
469467--469586	51	2.4	51	85	5	170	33	15	24	27	1.95
475251--475313	33	1.9	33	87	6	92	42	14	12	30	1.82
476769--476797	14	2.0	15	93	6	51	65	0	0	34	0.93
486650--486675	13	2.0	13	100	0	52	30	15	15	38	1.88
486745--486800	20	2.8	20	86	5	69	32	16	12	39	1.85
487395--487438	21	2.1	21	83	8	54	25	31	2	40	1.68
489236--489299	13	4.9	13	94	0	110	31	15	18	34	1.93
489236--489299	26	2.5	26	100	0	128	31	15	18	34	1.93
493192--493241	21	2.3	21	79	3	55	24	14	4	58	1.53
495303--495328	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499218--499243	13	2.0	13	100	0	52	38	15	15	30	1.88
499701--499767	37	1.9	35	88	11	102	32	11	25	29	1.92
502866--502890	13	1.9	13	100	0	50	36	16	16	32	1.90
504455--504480	13	2.0	13	100	0	52	38	15	15	30	1.88
504938--505004	37	1.9	35	88	11	102	32	11	25	29	1.92
507038--507139	20	4.6	20	67	23	69	31	14	11	42	1.82
507024--507296	82	3.6	71	78	13	269	30	15	11	42	1.82
507188--507241	20	2.7	20	79	0	54	37	14	9	38	1.79
507156--507296	75	1.9	71	84	5	183	29	16	9	43	1.80
518087--518122	2	18.0	2	100	0	72	50	0	50	0	1.00

Tables:   1   2   3   4   5