genome.fa.s337.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold337
Parameters: 2 7 7 80 10 50 1000
Length:  762055

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 532 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522866--522930	19	3.8	18	69	24	59	32	10	15	41	1.81
522867--522938	32	2.2	32	90	0	108	31	11	16	40	1.84
522983--523007	13	1.9	13	100	0	50	32	16	16	36	1.90
529963--530048	42	2.0	42	93	0	145	26	19	19	33	1.96
534921--535251	163	2.0	161	83	7	411	29	10	9	50	1.68
535837--535886	13	3.8	13	84	10	59	64	0	36	0	0.94
536043--536119	21	3.5	21	70	13	73	42	29	22	5	1.75
536035--536150	46	2.5	46	95	0	205	42	30	22	5	1.75
536062--536144	25	3.5	25	70	12	84	44	27	20	7	1.78
536621--536713	40	2.3	40	81	7	109	44	21	27	6	1.77
536759--536822	22	2.9	22	83	2	83	60	10	25	3	1.44
547794--547871	20	3.9	19	74	11	68	35	11	11	41	1.78
547794--547871	40	2.0	39	82	7	95	35	11	11	41	1.78
557440--557487	20	2.4	19	79	6	51	41	0	2	56	1.11
558272--558313	20	2.2	20	86	4	59	50	0	2	47	1.14
559733--559787	26	2.1	26	93	0	92	41	16	9	32	1.80
563022--563091	20	3.6	19	82	5	77	30	17	14	38	1.89
563136--563194	20	3.0	20	82	9	84	35	11	23	28	1.91
566515--566585	32	2.2	33	94	2	126	33	11	18	36	1.86
566643--566668	13	2.0	13	100	0	52	30	15	15	38	1.88
566676--566789	52	2.2	52	93	0	192	38	19	14	27	1.91
566757--566809	20	2.7	20	100	0	106	39	15	15	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
575564--575615	20	2.6	19	82	8	59	32	17	11	38	1.85
575674--575712	20	2.0	19	85	5	51	33	10	28	28	1.90
578798--578868	20	3.5	20	80	0	88	30	12	14	42	1.82
585829--585901	20	3.6	20	77	3	92	35	12	19	32	1.89
585847--585922	21	3.7	21	75	3	82	40	10	17	31	1.83
585829--585922	41	2.3	41	92	0	161	38	11	18	31	1.86
585961--585986	13	2.0	13	100	0	52	38	15	15	30	1.88
590048--590078	15	2.1	15	93	0	53	48	16	22	12	1.80
592157--592195	13	3.0	13	96	0	69	30	17	15	35	1.91
595407--595488	28	2.9	28	80	7	96	26	17	31	24	1.97
595471--595641	51	3.3	51	79	4	198	32	11	26	29	1.92
595624--595699	27	2.8	28	88	6	102	21	21	34	23	1.97
598164--598189	13	2.0	13	100	0	52	38	15	15	30	1.88
598143--598209	33	2.0	33	88	0	98	43	16	14	25	1.86
598229--598296	19	3.9	18	76	23	83	38	14	11	35	1.83
598251--598275	13	1.9	13	100	0	50	32	16	16	36	1.90
598232--598294	32	2.0	32	96	0	117	36	15	12	34	1.86
598352--598408	21	2.7	21	97	0	105	36	19	12	31	1.89
598526--598553	13	2.2	13	100	0	56	21	39	21	17	1.93
598998--599746	55	13.4	54	85	7	950	23	20	28	28	1.98
599192--599277	29	3.1	29	65	21	83	18	19	32	29	1.96
599325--599468	27	5.3	27	62	16	73	22	18	30	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
600723--600780	12	4.8	12	74	6	55	0	8	8	82	0.84
600723--600779	15	3.8	14	75	13	51	0	8	7	84	0.79
600755--600780	13	2.0	13	100	0	52	0	7	7	84	0.77
606321--607398	268	4.0	268	99	0	2129	21	30	15	32	1.94
608345--608370	13	2.0	13	100	0	52	38	15	15	30	1.88
609594--609636	16	2.6	15	85	14	50	55	2	4	37	1.33
610691--610749	17	3.4	17	73	19	59	49	0	1	49	1.11
610696--610740	18	2.6	18	77	19	51	53	0	0	46	1.00
611030--611075	13	3.3	14	78	9	58	43	0	4	52	1.21
611147--611178	13	2.4	14	94	5	57	50	0	3	46	1.17
611591--611616	2	13.0	2	100	0	52	50	0	0	50	1.00
613378--613760	79	4.9	78	75	6	297	31	15	26	26	1.95
613383--613761	158	2.4	157	76	3	379	31	15	26	26	1.95
613690--613808	50	2.4	50	82	4	132	35	11	26	26	1.91
613606--613981	208	1.8	208	80	3	461	35	13	24	26	1.92
613741--613964	79	2.9	77	76	14	224	34	13	25	25	1.93
613640--613890	129	1.9	129	85	0	340	34	12	25	27	1.92
616280--616388	29	3.6	29	73	16	103	42	16	15	25	1.88
616313--616337	13	1.9	13	100	0	50	32	16	16	36	1.90
616264--616388	62	2.0	63	92	3	207	40	16	16	27	1.88
617017--617177	83	1.9	83	80	7	184	39	11	26	22	1.88
617058--617177	41	2.9	42	77	5	127	42	11	23	22	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
617017--617178	42	3.9	41	74	7	132	39	11	26	22	1.88
617301--617766	51	8.9	51	66	15	182	28	24	12	34	1.92
617435--617506	28	2.6	28	88	4	101	27	33	15	23	1.95
617384--617668	109	2.6	107	79	4	320	28	24	13	32	1.94
617541--617616	28	2.7	27	80	15	84	21	27	21	30	1.98
628564--628615	20	2.6	20	87	6	70	40	13	15	30	1.86
633542--633976	60	7.3	61	86	5	523	25	29	20	24	1.99
634020--634318	62	5.0	61	77	9	301	26	23	19	29	1.98
634020--634316	116	2.5	117	81	8	296	26	23	19	29	1.99
634329--634455	41	3.0	40	81	14	132	19	25	14	40	1.89
634485--634608	41	3.0	41	91	4	196	20	24	9	45	1.81
634419--634612	82	2.4	78	79	13	191	21	24	11	42	1.86
638442--638480	20	2.0	19	85	5	51	33	7	25	33	1.84
642348--642480	51	2.6	51	91	0	212	28	22	14	34	1.93
642330--642518	51	3.7	50	82	5	182	31	22	11	33	1.90
642583--642636	28	1.9	28	88	0	81	20	24	20	35	1.96
642642--642810	51	3.3	50	81	8	162	29	24	14	31	1.94
643803--643929	40	3.0	41	73	9	130	44	14	23	17	1.85
643956--644321	61	6.1	62	84	6	432	29	18	27	24	1.98
643957--644323	184	2.0	177	84	6	470	29	18	27	24	1.98
644352--644540	61	3.1	61	90	2	290	26	19	29	24	1.98
644155--644668	217	2.4	210	88	3	744	25	18	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
645582--645644	1	63.0	1	74	0	54	4	0	7	87	0.67
645582--645643	8	7.9	8	82	10	65	4	0	8	87	0.68
645582--645645	16	4.0	15	82	11	74	6	0	7	85	0.73
657791--658177	79	4.9	78	76	5	310	33	14	24	27	1.94
657909--657965	28	1.9	30	86	10	82	33	8	26	31	1.87
657791--658178	158	2.5	158	79	3	377	33	14	24	27	1.94
658030--658307	129	2.1	131	81	4	323	34	15	23	27	1.94
657951--658398	208	2.1	208	80	4	474	34	15	23	26	1.95
658160--658383	79	2.8	78	79	7	256	32	16	25	25	1.96
668199--668258	20	3.0	20	78	14	70	41	0	0	58	0.98
669071--669107	19	1.9	19	94	0	65	62	2	16	18	1.45
671420--671465	20	2.3	20	85	7	58	32	15	10	41	1.82
671502--671592	20	4.6	19	76	13	78	38	14	16	30	1.88
673158--673329	78	2.2	80	84	7	226	29	14	26	29	1.95
673258--673443	52	3.6	49	82	10	230	31	11	26	30	1.91
673260--673447	51	3.7	50	83	6	234	30	11	27	30	1.91
675811--675875	32	2.0	34	87	6	98	33	18	10	36	1.86
675991--676024	4	8.2	4	93	6	59	26	0	0	73	0.83
677102--677126	13	1.9	13	100	0	50	32	16	16	36	1.90
677082--677149	33	2.1	33	88	2	102	35	17	14	32	1.91
688080--688104	13	1.9	13	100	0	50	32	16	16	36	1.90
688195--688219	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
688175--688241	33	2.1	33	88	2	100	35	17	13	32	1.89
690714--690912	100	2.0	100	96	0	371	48	11	19	20	1.79
691263--691335	20	3.7	19	85	7	85	26	17	19	36	1.94
691380--691410	13	2.4	13	94	0	53	35	16	12	35	1.87
691364--691430	33	2.0	32	88	11	100	35	13	17	32	1.89
697893--697974	28	2.9	28	80	7	96	26	17	31	24	1.97
697959--698127	51	3.3	51	80	4	203	33	11	24	30	1.90
698110--698182	27	2.7	27	85	6	85	21	21	32	23	1.98
700649--700674	13	2.0	13	100	0	52	38	15	15	30	1.88
700628--700694	33	2.0	33	88	0	98	43	16	14	25	1.86

Tables:   1   2   3   4   5