genome.fa.s337.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold337
Parameters: 2 7 7 80 10 50 1000
Length:  762055

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 532 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700714--700781	19	3.9	18	76	23	83	38	14	11	35	1.83
700736--700760	13	1.9	13	100	0	50	32	16	16	36	1.90
700717--700779	32	2.0	32	96	0	117	36	15	12	34	1.86
700837--700893	21	2.7	21	97	0	105	36	19	10	33	1.86
700896--700937	14	3.1	14	83	10	61	14	4	0	80	0.86
702252--702298	15	3.1	15	81	9	51	31	12	4	51	1.59
704332--704384	20	2.7	20	82	5	63	32	16	13	37	1.88
704413--704466	20	2.8	20	83	8	67	38	12	14	33	1.85
709688--709741	20	2.6	20	82	5	63	40	0	0	59	0.98
710071--710110	2	20.5	2	84	5	55	45	2	2	50	1.28
716062--716086	13	1.9	13	100	0	50	36	16	16	32	1.90
716151--716175	13	1.9	13	100	0	50	32	16	16	36	1.90
716129--716195	33	2.0	33	88	0	98	40	13	11	34	1.81
716577--716627	25	2.0	25	84	0	66	31	1	1	64	1.15
719427--719466	21	2.0	21	90	9	66	50	17	12	20	1.78
720511--720551	20	2.0	20	90	0	64	39	21	12	26	1.89
720561--720585	13	1.9	13	100	0	50	32	16	16	36	1.90
720660--720707	20	2.5	20	89	3	71	39	22	12	25	1.89
725495--725535	22	2.0	21	86	13	59	41	4	21	31	1.74
725667--725705	13	3.0	13	85	14	62	30	15	20	33	1.94
732353--732377	13	1.9	13	100	0	50	32	16	16	36	1.90
732365--732417	20	2.6	21	82	8	65	37	15	16	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
733363--733416	20	2.7	20	91	0	90	37	11	14	37	1.82
733437--733484	19	2.5	19	86	6	62	41	14	12	31	1.83
736834--736859	13	2.0	13	100	0	52	38	15	15	30	1.88
736816--736879	32	2.0	33	90	3	103	42	15	14	28	1.86
739076--739125	21	2.3	21	80	10	57	56	4	18	22	1.58
743026--743063	13	2.9	13	96	0	67	34	18	15	31	1.92
743175--743220	21	2.2	20	81	11	58	32	19	4	43	1.71
744854--744944	39	2.3	40	79	9	105	37	5	23	34	1.78
745567--745592	13	2.0	13	100	0	52	38	15	15	30	1.88
745549--745612	32	2.0	33	87	3	94	40	15	15	28	1.88
746390--746451	30	2.1	30	81	6	72	25	33	11	29	1.91
746457--746800	62	5.6	62	85	2	424	24	23	18	33	1.97
746454--746784	122	2.7	124	86	2	443	24	23	19	32	1.98
746769--747117	42	8.5	41	70	13	182	18	24	14	41	1.88
746797--747117	43	7.7	42	70	16	170	17	24	14	43	1.87
746769--747116	85	4.2	85	71	15	223	18	25	14	41	1.88
750397--750569	79	2.2	79	82	6	199	27	27	15	30	1.96
750260--750541	130	2.1	135	82	7	344	28	24	13	34	1.93
752168--752512	155	2.2	156	80	5	367	40	14	14	31	1.85
752989--753277	157	1.8	157	84	5	397	40	10	15	34	1.81
753556--754738	158	7.5	158	72	10	727	39	10	17	32	1.83
754876--754916	20	2.0	20	90	0	64	36	17	17	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
755955--756300	156	2.2	156	80	12	388	39	12	15	32	1.85
756566--757454	157	5.7	152	71	13	470	38	11	15	34	1.84
756934--757445	156	3.3	155	73	14	494	38	10	15	35	1.81
756742--757424	312	2.2	314	90	1	1088	38	11	14	35	1.83
758281--758309	15	2.0	15	93	6	51	41	17	13	27	1.87
758386--758445	21	2.9	21	74	20	63	38	11	15	35	1.83
760670--760695	13	2.0	13	100	0	52	38	15	15	30	1.88
760652--760715	32	2.0	33	90	3	103	42	17	12	28	1.85

Tables:   1   2   3   4   5

The End!