genome.fa.s350.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold350
Parameters: 2 7 7 80 10 50 1000
Length:  1036165

Tables:   1   2   3   4   5   6   7   8   

This is table  5  of  8  ( 841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591047--591110	19	3.7	18	70	23	57	34	15	12	37	1.85
591813--592127	49	6.1	51	81	8	343	33	16	27	23	1.95
591873--592127	101	2.5	101	92	0	411	32	17	27	22	1.96
592059--592198	70	2.0	70	97	0	262	35	16	27	20	1.94
592154--593657	52	29.5	52	88	3	2159	33	18	25	23	1.97
591922--592352	223	1.9	220	91	2	711	33	17	27	21	1.96
592129--593657	153	10.0	154	93	1	2188	33	18	25	23	1.96
593671--593745	30	2.5	31	80	12	93	20	18	28	33	1.96
593684--593750	30	2.3	29	87	5	100	17	14	31	35	1.91
593741--594093	34	10.4	34	85	5	423	36	13	32	18	1.89
593962--594027	32	2.2	28	72	25	71	33	13	34	18	1.90
594062--594185	29	4.3	29	80	11	121	33	12	30	22	1.92
598876--599005	52	2.5	52	92	0	224	27	17	18	36	1.94
599089--599151	19	3.7	18	76	24	73	36	17	12	33	1.88
599082--599165	32	2.6	32	98	0	159	36	16	13	33	1.87
599108--599164	13	3.9	13	76	24	60	33	17	14	35	1.90
601707--601818	58	1.9	58	83	0	143	29	20	19	30	1.97
602164--602280	58	2.0	58	85	3	155	29	23	20	27	1.99
605116--605158	22	2.0	22	95	0	77	27	4	23	44	1.73
607926--607978	17	2.9	17	81	18	63	11	3	5	79	1.03
612609--612634	13	2.0	13	100	0	52	38	15	15	30	1.88
612588--612656	33	2.1	33	86	5	95	33	17	13	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612622--612695	20	3.8	20	80	7	80	35	16	14	33	1.89
616325--616350	13	2.0	13	100	0	52	30	15	15	38	1.88
617050--617093	21	2.1	21	83	8	54	25	31	4	38	1.76
620333--620388	22	2.5	23	94	5	105	17	10	8	62	1.52
620341--620395	22	2.6	21	88	5	58	20	9	9	61	1.52
626537--626583	21	2.2	21	85	11	60	76	8	8	6	1.15
627898--628636	27	27.0	27	91	2	1156	23	34	14	27	1.93
628619--629124	32	15.8	32	94	0	852	31	34	17	16	1.92
630179--630236	22	2.4	25	83	16	95	17	10	8	63	1.49
630188--630236	22	2.2	22	100	0	98	16	8	8	67	1.40
630189--630243	22	2.6	21	88	5	58	20	9	9	61	1.52
633916--633946	15	2.1	15	93	0	53	12	22	16	48	1.80
635750--635794	21	2.1	21	84	8	56	22	20	4	53	1.63
638009--638034	13	2.0	13	100	0	52	30	15	15	38	1.88
638115--638168	20	2.7	20	100	0	108	24	11	18	46	1.81
639602--639651	19	2.6	19	93	0	82	34	12	16	38	1.85
639703--639728	13	2.0	13	100	0	52	30	15	15	38	1.88
642084--642218	51	2.6	51	92	0	234	30	28	11	29	1.91
642150--642297	79	1.9	79	84	2	199	27	27	14	30	1.95
642099--642375	130	2.1	131	83	4	337	27	27	13	31	1.94
642328--642404	28	2.8	28	89	0	118	22	32	20	24	1.98
642198--642527	158	2.1	160	91	2	542	26	26	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642229--642505	51	5.3	51	72	10	229	26	27	14	31	1.95
648464--648520	20	2.9	20	81	5	71	38	12	15	33	1.85
648711--648753	21	2.0	21	86	0	59	32	13	16	37	1.88
648810--648834	13	1.9	13	100	0	50	36	16	16	32	1.90
648791--648853	32	2.0	32	93	0	108	34	11	17	36	1.85
648790--648855	19	3.8	18	75	22	70	34	10	16	37	1.83
648897--648921	13	1.9	13	100	0	50	32	16	16	36	1.90
648932--649055	52	2.4	52	97	0	230	37	20	16	25	1.93
662904--662993	22	4.2	21	79	13	103	86	10	3	0	0.67
662902--663004	33	3.0	34	81	16	131	85	11	2	0	0.70
662904--663004	42	2.4	42	84	9	127	86	10	2	0	0.68
662904--662995	1	92.0	1	73	0	76	86	9	3	0	0.66
664494--664653	34	4.7	33	78	8	151	20	33	10	36	1.87
664483--664648	68	2.4	68	85	4	208	21	33	10	34	1.88
664621--664702	27	2.9	28	87	7	96	24	30	18	26	1.98
664641--664748	28	3.8	28	79	7	112	30	30	17	21	1.96
664631--664748	29	4.2	27	80	10	96	30	32	16	21	1.95
664770--665089	49	6.8	46	73	13	210	26	25	18	29	1.98
664876--665051	49	3.6	49	82	6	212	23	27	19	29	1.98
664857--665046	98	1.9	100	87	4	278	24	27	18	29	1.98
665950--666044	19	5.6	19	71	27	97	35	12	17	33	1.88
665967--666023	13	3.9	13	76	24	60	35	14	17	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
665950--666042	32	2.9	32	98	0	177	35	12	18	33	1.89
666119--666244	52	2.4	52	86	0	189	37	16	18	27	1.92
669815--669881	33	2.0	33	85	0	89	37	10	11	40	1.77
671000--671049	19	2.5	20	84	12	68	32	14	12	42	1.82
676412--676437	13	2.0	13	100	0	52	30	15	15	38	1.88
680348--680389	22	1.9	22	90	0	66	42	4	33	19	1.72
680966--681052	20	4.7	20	71	25	75	28	14	16	40	1.88
680985--681064	13	7.1	13	64	30	58	30	15	16	38	1.89
680966--681084	53	2.2	53	98	0	229	31	15	15	37	1.89
681038--681182	33	4.5	33	65	25	94	32	17	17	33	1.93
681131--681182	13	4.5	13	73	26	62	32	13	17	36	1.89
683055--683089	16	2.2	16	90	10	54	34	0	17	48	1.47
683232--683388	38	4.2	38	67	14	99	24	17	22	35	1.95
684743--685025	147	1.9	146	84	3	381	37	9	8	44	1.68
692716--692792	31	2.5	31	95	0	136	44	12	18	24	1.85
692776--692852	20	3.8	20	79	6	84	41	11	12	33	1.80
694425--694550	60	2.1	60	90	0	198	34	14	15	36	1.87
694639--694678	21	1.9	21	89	0	62	35	12	7	45	1.70
695206--695285	33	2.4	33	81	4	90	27	12	13	46	1.80
695867--695946	22	3.7	21	86	0	79	41	16	12	30	1.85
696023--696073	21	2.4	21	75	18	52	47	17	7	27	1.75
696824--696886	24	2.6	24	97	0	117	57	14	0	28	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
696910--696966	30	1.9	30	85	0	78	47	15	7	29	1.72
698042--698080	15	2.5	15	87	4	51	61	2	5	30	1.31
702725--702750	13	2.0	13	100	0	52	38	15	15	30	1.88
706814--706852	15	2.6	15	91	0	60	51	15	20	12	1.76
708860--708937	20	3.6	21	73	15	70	25	12	16	44	1.83
708924--708962	13	3.0	13	96	0	69	30	17	15	35	1.91
710768--710813	16	2.8	16	93	6	74	28	2	39	30	1.69
711512--711537	13	2.0	13	100	0	52	38	15	15	30	1.88
717287--717386	33	3.0	33	87	8	141	22	29	15	34	1.94
717576--717912	101	3.3	101	91	1	512	23	26	18	32	1.97
717486--717912	153	2.9	148	87	6	605	23	26	18	31	1.97
717576--717912	52	6.6	52	88	4	479	23	26	18	32	1.97
719200--719282	19	4.7	19	77	17	106	30	12	21	36	1.90
719201--719263	32	2.0	32	93	0	108	30	12	22	34	1.91
719335--719362	13	2.2	13	100	0	56	28	14	17	39	1.89
720680--720713	16	2.1	16	94	0	59	52	26	5	14	1.64
721197--721246	21	2.4	21	82	0	64	40	12	12	36	1.79
731263--731289	13	2.1	13	100	0	54	29	14	14	40	1.86
731273--731328	19	2.9	19	81	2	67	35	16	12	35	1.86
731246--731308	32	1.9	33	87	3	92	31	15	11	41	1.83
737568--737593	13	2.0	13	100	0	52	38	15	15	30	1.88
739811--739855	21	2.1	21	84	8	56	53	4	20	22	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
741659--741689	15	2.1	15	93	0	53	48	16	22	12	1.80
743699--743778	20	3.8	20	75	15	79	26	15	15	43	1.85
743764--743802	13	3.0	13	96	0	69	30	17	15	35	1.91
743924--743970	21	2.3	21	79	20	55	34	19	4	42	1.70
743926--743968	20	2.2	19	84	16	52	32	18	4	44	1.71
746335--746397	19	3.6	19	76	24	84	36	15	19	28	1.92
746353--746410	13	4.0	13	76	23	62	37	15	17	29	1.90
746335--746410	32	2.4	32	100	0	152	36	15	18	28	1.92
747502--747526	13	1.9	13	100	0	50	28	16	16	40	1.89
750019--750068	20	2.5	20	87	3	66	34	16	14	36	1.88

Tables:   1   2   3   4   5   6   7   8