genome.fa.s367.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold367
Parameters: 2 7 7 80 10 50 1000
Length:  914901

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 587 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180794--180820	13	2.1	13	100	0	54	40	14	14	29	1.86
180829--180868	20	2.0	20	85	0	53	22	15	30	32	1.94
183284--183309	13	2.0	13	100	0	52	30	15	15	38	1.88
183379--183434	20	2.8	20	89	5	78	28	17	16	37	1.91
184202--184243	22	1.9	22	90	0	66	21	28	4	45	1.72
188452--188691	120	2.0	120	98	0	462	33	17	10	37	1.85
191083--191132	19	2.5	20	87	3	66	30	16	14	40	1.87
201298--201336	17	2.2	18	86	4	53	87	5	2	5	0.75
202421--202796	61	6.4	54	83	8	239	26	27	19	26	1.99
202476--202559	27	3.1	27	63	17	66	26	29	21	22	1.99
202477--202991	61	8.6	61	84	5	595	26	27	18	26	1.98
202963--203317	41	8.5	41	73	11	215	22	25	13	38	1.91
203136--203315	83	2.2	83	79	4	202	25	25	13	36	1.93
203842--203974	49	2.7	49	94	0	221	26	17	16	39	1.90
206359--206624	51	5.3	51	70	10	172	29	25	12	32	1.92
206340--206623	148	1.9	148	83	4	367	29	26	11	32	1.92
206558--206774	78	2.8	78	87	4	294	26	25	15	32	1.96
212944--213010	34	1.9	35	85	11	93	35	25	1	37	1.65
215301--215345	20	2.1	22	88	8	67	48	6	8	35	1.61
223851--223904	22	2.5	21	82	14	58	50	3	1	44	1.30
227929--227963	7	4.9	7	89	6	52	22	31	28	17	1.96
238668--238698	2	15.5	2	100	0	62	51	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241702--241733	17	1.9	16	93	6	55	62	9	9	18	1.52
249651--249676	2	13.0	2	100	0	52	50	0	0	50	1.00
251363--251387	13	1.9	13	100	0	50	40	4	8	48	1.51
253189--253269	14	5.8	14	76	12	69	37	0	1	61	1.04
253478--253516	18	2.0	20	90	9	64	46	0	0	53	1.00
254402--254583	37	4.8	37	77	8	152	36	20	16	26	1.94
257009--257050	21	2.0	21	90	9	68	52	0	0	47	1.00
257031--257079	24	2.0	24	84	7	64	53	0	0	46	1.00
264851--264883	2	17.0	2	87	6	50	45	0	0	54	0.99
265280--265327	18	2.5	20	90	10	82	58	4	0	37	1.18
270513--270537	2	12.5	2	100	0	50	52	0	0	48	1.00
271003--271038	16	2.2	16	90	0	54	55	2	2	38	1.29
275014--275041	2	14.0	2	100	0	56	50	0	0	50	1.00
275419--275447	14	2.0	15	93	6	51	41	0	3	55	1.17
277109--277159	13	3.8	13	82	7	59	66	1	0	31	1.03
277133--277167	18	2.0	17	88	5	52	68	0	0	31	0.90
286879--286988	53	2.1	53	100	0	220	20	20	16	42	1.89
289891--289927	18	2.1	18	89	0	56	59	0	0	40	0.97
289886--289963	31	2.5	31	79	8	88	56	1	1	41	1.15
294802--294834	15	2.2	16	89	10	52	69	0	3	27	1.03
322660--322709	20	2.5	20	100	0	100	60	4	0	36	1.16
323068--323124	27	2.1	27	81	12	64	57	1	1	38	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324862--324907	23	2.0	23	91	0	74	34	13	8	43	1.74
327968--328049	32	2.4	34	80	8	96	42	0	1	56	1.07
328027--328067	11	3.7	11	96	0	73	41	0	0	58	0.98
328028--328075	22	2.2	22	88	0	69	41	2	0	56	1.11
328359--328408	21	2.4	22	86	6	68	56	2	2	40	1.22
328379--328421	16	2.7	16	92	0	68	58	2	0	39	1.11
332014--332039	2	13.0	2	100	0	52	50	0	0	50	1.00
332417--332445	14	2.0	15	93	6	51	41	0	3	55	1.17
334108--334158	13	3.8	13	82	7	59	66	1	0	31	1.03
335274--335330	22	2.7	20	78	8	60	29	1	14	54	1.50
343883--343993	53	2.1	54	98	1	215	19	20	15	44	1.87
346900--346936	18	2.1	18	89	0	56	59	0	0	40	0.97
346895--346973	31	2.5	32	78	10	92	56	1	1	40	1.15
346948--347023	28	2.5	31	79	12	79	56	0	9	34	1.31
352787--352812	2	13.0	2	100	0	52	50	0	0	50	1.00
353178--353243	27	2.4	27	85	7	89	50	3	1	45	1.26
353178--353243	26	2.5	26	87	5	87	50	3	1	45	1.26
354334--354367	16	2.1	17	88	5	52	52	2	0	44	1.16
363141--363175	18	1.9	18	100	0	70	22	25	5	45	1.74
364873--364922	26	2.0	26	92	4	84	44	0	30	26	1.55
365619--365685	33	2.0	33	88	0	98	32	11	14	40	1.83
369101--369148	18	2.9	16	79	11	60	6	0	18	75	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369544--369590	25	1.9	24	82	4	58	38	2	2	57	1.23
371540--371910	79	4.7	79	84	3	460	33	13	25	27	1.93
371565--372019	159	3.0	159	82	8	484	34	13	24	27	1.93
371955--372073	51	2.3	51	82	2	141	36	10	22	30	1.89
375237--375983	61	12.3	60	81	3	721	29	18	25	26	1.98
375237--375991	123	6.2	121	79	4	727	30	18	25	26	1.98
375223--375957	184	4.0	182	81	5	779	30	18	25	26	1.98
378449--380722	269	8.5	267	78	5	1825	38	13	15	32	1.86
378449--380722	88	25.5	88	78	5	1704	38	13	15	32	1.86
384108--384154	18	2.5	19	77	16	53	70	12	8	8	1.34
384172--384231	17	3.6	16	80	6	57	73	13	1	11	1.18
385048--385084	2	18.5	2	100	0	74	0	48	0	51	1.00
391530--391698	89	1.9	89	97	0	320	27	20	13	39	1.89
391549--391729	89	2.0	87	82	8	211	29	20	11	37	1.88
398140--398210	29	2.4	29	83	4	90	52	1	0	46	1.09
398140--398211	28	2.5	29	78	10	85	51	1	0	47	1.09
398844--398884	6	6.8	6	82	0	55	75	2	21	0	0.92
399969--400001	5	6.6	5	100	0	66	0	39	0	60	0.97
402652--402715	14	4.5	14	79	11	67	46	1	3	48	1.27
402652--402715	29	2.2	28	86	10	94	46	1	3	48	1.27
402664--402727	29	2.2	29	83	10	78	50	1	3	45	1.27
403345--403392	15	3.3	15	82	2	62	64	2	0	33	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403585--403626	22	1.9	22	90	0	66	33	19	7	40	1.78
405285--405392	14	7.5	14	74	6	81	38	17	12	30	1.88
405299--405403	29	3.6	29	84	0	111	40	19	11	29	1.86
405586--405647	3	20.7	3	100	0	124	67	0	0	32	0.91
405807--405841	3	11.7	3	100	0	70	68	0	0	31	0.90
406442--406467	2	13.0	2	100	0	52	50	0	0	50	1.00
409130--409201	21	3.5	20	84	7	92	40	12	15	31	1.84
411475--411507	2	16.5	2	100	0	66	51	0	0	48	1.00
418299--418777	167	2.9	166	85	6	614	29	9	9	51	1.66
418299--418851	166	3.3	162	81	9	591	29	10	9	51	1.67
419270--419296	14	1.9	14	100	0	54	70	0	14	14	1.17
419419--419471	14	3.9	13	80	11	54	83	1	13	1	0.82
420324--420358	15	2.2	15	90	10	52	74	0	0	25	0.82
420390--420664	148	1.9	147	80	3	329	37	12	13	37	1.82
420899--421197	155	1.9	156	84	7	403	26	15	19	38	1.91
424746--424788	9	4.9	9	85	5	61	86	2	11	0	0.67
425783--425853	32	2.2	32	89	0	106	33	9	16	39	1.82
425898--425922	13	1.9	13	100	0	50	32	16	16	36	1.90
425931--426059	52	2.5	52	90	0	213	34	15	18	31	1.92
427524--427556	15	2.1	16	88	5	50	81	9	3	6	0.95
427810--427860	21	2.5	20	80	3	57	80	7	11	0	0.90
430673--430730	10	5.5	10	83	16	73	1	20	0	77	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430673--430730	24	2.7	21	85	15	75	1	20	0	77	0.86
431587--432316	32	22.8	32	93	0	1192	16	18	33	31	1.93
432299--433335	27	38.0	27	89	1	1543	29	14	33	22	1.94
432299--433335	191	5.4	189	91	2	1563	29	14	33	22	1.94
434387--434417	1	31.0	1	93	0	53	0	0	3	96	0.21
442835--443143	31	10.0	31	81	8	346	23	28	15	32	1.95
442834--443121	125	2.3	122	85	7	357	22	29	14	33	1.94
442850--443154	158	1.9	158	83	8	383	22	29	15	32	1.95
443151--443247	32	3.0	33	76	3	115	27	31	17	22	1.97
443251--444082	92	9.0	92	92	3	1345	25	25	17	31	1.97

Tables:   1   2   3   4   5