genome.fa.s367.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold367
Parameters: 2 7 7 80 10 50 1000
Length:  914901

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 587 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443854--443964	22	5.1	22	61	27	58	25	27	17	29	1.97
443897--444081	95	1.9	97	91	6	302	24	26	17	31	1.97
443253--444101	49	18.2	49	80	12	949	24	25	17	32	1.97
443897--444123	101	2.3	101	85	7	263	25	25	16	32	1.96
444816--444880	19	3.8	18	71	24	68	32	12	15	40	1.84
444818--444888	32	2.2	32	94	0	124	32	12	16	38	1.87
451775--451816	14	2.9	15	78	7	50	40	21	14	23	1.90
451795--451874	29	2.8	29	77	7	90	38	13	13	33	1.85
451990--452030	14	2.8	15	81	7	57	39	19	14	26	1.90
452078--452141	29	2.2	29	86	2	85	39	18	15	26	1.91
452091--452194	43	2.4	43	81	0	118	39	23	13	24	1.90
452091--452194	14	7.3	14	72	4	64	39	23	13	24	1.90
453195--453346	80	1.9	80	93	0	259	34	12	9	42	1.76
454141--454174	14	2.4	15	85	14	54	20	20	14	44	1.87
454127--454179	9	6.2	9	71	20	51	20	20	15	43	1.88
454715--454758	20	2.2	21	84	8	56	81	9	4	4	0.96
458644--458687	19	2.2	20	84	11	56	54	0	0	45	0.99
459097--459135	6	6.2	6	82	11	51	82	2	0	15	0.79
459099--459152	7	7.7	7	80	13	58	81	1	5	11	0.93
459099--459135	13	2.8	13	91	0	65	83	2	0	13	0.74
459168--459212	18	2.4	18	85	14	56	44	0	0	55	0.99
459168--459233	20	3.4	19	75	24	59	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459168--459233	19	3.4	19	78	21	59	45	0	0	54	0.99
459262--459298	18	2.1	18	89	0	56	78	2	10	8	1.06
462601--462653	15	3.2	16	78	10	54	33	0	1	64	1.05
463621--463669	26	1.9	26	84	12	66	51	4	0	44	1.20
464456--464499	21	2.1	21	87	4	63	36	0	11	52	1.38
466306--466335	2	15.0	2	92	0	51	50	0	3	46	1.18
468003--468042	19	2.0	20	95	4	73	40	0	10	50	1.36
469963--470019	29	1.9	30	85	7	80	38	3	3	54	1.35
469969--470031	30	2.1	30	82	5	74	42	1	3	52	1.27
469993--470039	24	2.1	22	81	18	53	40	0	0	59	0.97
470004--470040	16	2.3	17	86	9	51	40	0	0	59	0.97
472220--472310	34	2.7	33	86	6	119	63	3	2	30	1.22
476171--476241	24	3.0	22	74	11	70	45	4	1	49	1.30
478544--478607	28	2.4	27	76	7	67	32	10	6	50	1.63
479497--479566	22	3.2	22	81	0	77	40	2	4	52	1.36
479697--479775	22	3.6	22	80	0	95	30	11	13	44	1.80
480163--480229	22	3.0	22	82	0	89	31	8	11	47	1.71
480407--480467	22	2.8	22	80	5	70	37	9	8	44	1.68
486533--486562	2	15.0	2	100	0	60	50	0	0	50	1.00
493090--493136	22	2.0	22	88	8	67	76	2	0	21	0.89
493096--493128	14	2.3	15	89	5	50	75	3	0	21	0.93
494125--494187	27	2.3	27	81	5	74	66	0	1	31	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498589--498662	36	2.1	36	97	0	139	32	25	9	32	1.88
499935--499978	20	2.2	20	83	0	52	47	4	25	22	1.70
502000--502069	10	6.9	10	76	9	54	62	0	0	37	0.95
502012--502069	5	11.4	5	75	10	55	62	0	0	37	0.96
502006--502073	21	3.2	22	78	15	81	61	0	0	38	0.96
502358--502440	16	5.1	16	77	11	71	34	2	6	56	1.37
502472--502523	14	3.7	14	76	7	52	46	0	9	44	1.36
502471--502538	21	3.2	21	78	12	59	45	1	10	42	1.47
502948--502997	21	2.4	21	86	6	66	28	6	2	64	1.28
504029--504076	20	2.5	18	87	12	69	64	0	0	35	0.94
504029--504075	19	2.4	21	89	10	73	65	0	0	34	0.93
505334--505591	131	2.0	132	93	2	441	50	8	2	38	1.46
507456--507513	27	2.3	27	82	14	70	41	0	0	58	0.98
507693--507717	13	1.9	13	100	0	50	48	4	0	48	1.20
508600--508655	4	14.8	4	74	23	50	76	0	21	1	0.87
508618--508659	11	3.9	11	81	6	50	83	0	16	0	0.65
508987--509036	16	3.3	15	75	16	50	26	2	0	72	0.96
511716--511751	2	18.0	2	100	0	72	50	0	0	50	1.00
513716--513836	62	2.0	62	89	0	188	22	20	14	42	1.89
514070--514100	16	1.9	16	93	0	53	54	12	3	29	1.53
514241--514269	2	14.5	2	100	0	58	51	0	48	0	1.00
516541--516605	23	2.6	25	74	16	64	41	3	3	52	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516555--516616	24	2.6	24	80	12	65	45	3	3	48	1.34
517884--517923	3	13.3	3	100	0	80	67	0	0	32	0.91
517919--517944	4	6.5	4	100	0	52	76	0	0	23	0.78
518474--518588	32	3.7	31	77	5	108	40	5	4	50	1.45
527108--527171	27	2.4	25	76	21	60	34	0	3	62	1.11
531524--531728	79	2.6	78	81	5	216	27	18	30	22	1.97
531745--531864	51	2.3	53	84	2	145	35	11	21	30	1.89
534210--534263	21	2.6	21	88	2	74	46	12	14	25	1.81
534283--534350	19	3.9	18	76	23	83	36	16	11	35	1.85
534305--534329	13	1.9	13	100	0	50	32	16	16	36	1.90
534286--534348	32	2.0	32	96	0	117	34	17	12	34	1.88
539027--539078	21	2.5	22	81	9	63	28	13	17	40	1.87
541977--542001	2	12.5	2	100	0	50	48	0	0	52	1.00
544114--544207	40	2.3	40	88	0	143	41	12	14	30	1.84
544113--544178	20	3.3	20	68	8	62	42	12	15	30	1.83
547903--547951	17	2.8	17	79	14	64	32	0	6	61	1.21
548195--548238	21	2.2	20	88	12	63	50	9	6	34	1.61
548455--548506	16	3.2	16	86	2	59	17	13	23	46	1.83
548830--548864	7	5.0	7	89	0	52	31	2	8	57	1.44
549408--549453	16	2.8	17	83	3	58	30	4	15	50	1.63
550002--550082	39	2.1	39	97	0	153	34	14	16	34	1.89
551188--551248	29	2.1	29	100	0	122	37	0	3	59	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
551192--551261	29	2.4	29	90	2	95	41	0	5	52	1.25
554250--554290	2	20.5	2	89	0	55	4	46	0	48	1.23
558026--558079	20	2.7	20	100	0	108	44	14	14	25	1.84
558454--558521	19	3.9	19	78	21	85	35	11	14	38	1.83
558475--558499	13	1.9	13	100	0	50	36	16	16	32	1.90
558456--558518	32	2.0	32	96	0	117	34	12	15	36	1.86
558541--558607	33	2.0	33	85	0	89	26	14	14	43	1.85
559123--559149	11	2.5	11	100	0	54	92	7	0	0	0.38
560958--561088	51	2.5	53	84	8	178	31	25	10	32	1.90
561139--561322	52	3.5	51	82	3	224	30	25	10	33	1.90
561310--561380	28	2.6	27	86	6	90	22	36	18	22	1.95
561257--561459	106	1.9	107	82	5	259	27	29	14	28	1.95
561335--561503	78	2.2	78	78	8	184	24	30	16	28	1.97
563342--563395	13	3.9	14	72	18	51	85	1	11	1	0.76
563342--563396	16	3.4	15	80	12	56	83	1	12	1	0.80
563326--563395	26	2.8	24	83	12	86	84	1	11	2	0.80
563329--563396	11	6.0	11	75	6	57	82	1	13	2	0.86
563355--563396	10	4.0	10	82	17	50	85	2	11	0	0.68
566965--566998	10	3.3	10	88	8	50	29	2	0	67	1.05
566965--567006	20	2.0	21	86	4	59	30	2	0	66	1.04
567106--567151	20	2.3	20	79	17	51	41	0	0	58	0.98
567086--567131	24	1.9	24	82	8	58	34	4	0	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
568236--568265	2	15.0	2	100	0	60	50	0	0	50	1.00
569613--569637	12	2.1	12	100	0	50	24	8	8	60	1.52
583600--583626	14	1.9	14	100	0	54	14	0	0	85	0.61
583643--583694	22	2.3	23	80	6	61	32	1	17	48	1.58
583690--583737	23	2.1	22	81	11	53	37	0	0	62	0.95
583870--583905	18	2.0	18	94	0	63	47	2	0	50	1.15
583930--584010	19	4.5	18	73	14	62	65	1	0	33	1.01
585288--585331	22	2.0	22	82	8	54	52	0	2	45	1.13
586917--586958	22	2.0	21	86	13	59	47	9	4	38	1.57
590177--590305	52	2.5	52	94	0	222	27	17	17	36	1.93

Tables:   1   2   3   4   5