genome.fa.s367.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold367
Parameters: 2 7 7 80 10 50 1000
Length:  914901

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 587 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
590314--590338	13	1.9	13	100	0	50	36	16	16	32	1.90
590376--590444	32	2.1	33	91	2	113	36	15	11	36	1.84
593572--593608	18	2.1	18	89	0	56	27	16	0	56	1.40
594513--594668	83	1.9	81	84	3	206	36	10	7	44	1.68
594537--594703	86	2.0	84	86	3	237	36	11	7	43	1.71
595008--595074	31	2.2	31	81	10	75	38	11	19	29	1.88
595100--595131	11	2.8	12	90	9	57	84	0	15	0	0.63
596607--596671	20	3.2	21	79	16	66	41	1	0	56	1.08
599824--599869	21	2.1	21	84	11	58	65	0	2	32	1.05
608111--608148	20	1.9	20	89	10	60	63	0	0	36	0.95
608153--608178	5	5.2	5	100	0	52	0	19	0	80	0.71
608712--608751	20	2.0	20	85	9	55	45	2	0	52	1.14
608782--608846	16	4.1	15	79	13	69	36	3	1	58	1.23
609182--609218	19	1.9	19	88	0	56	16	2	13	67	1.34
609195--609263	22	3.1	21	74	13	59	13	5	8	72	1.26
609214--609255	12	3.6	12	80	3	50	14	9	0	76	1.02
612818--613809	91	11.0	91	81	5	996	30	15	13	40	1.86
612818--613810	270	3.7	269	82	3	1091	30	15	13	40	1.86
617124--617243	52	2.3	52	97	0	222	29	17	18	35	1.94
617124--617263	52	2.7	51	90	4	210	30	17	18	33	1.94
617252--617276	13	1.9	13	100	0	50	36	16	16	32	1.90
617342--617366	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
617320--617386	33	2.0	33	88	0	98	40	13	11	34	1.81
619906--619953	25	1.9	25	82	0	60	62	8	4	25	1.41
622013--622043	2	15.5	2	100	0	62	51	0	0	48	1.00
622352--622385	15	2.3	15	90	10	52	38	0	0	61	0.96
623554--623609	18	3.0	19	78	16	55	64	0	0	35	0.94
623637--623680	19	2.3	19	84	11	54	45	20	0	34	1.51
623635--623680	20	2.3	20	81	7	58	45	19	0	34	1.51
623734--623771	2	19.0	2	100	0	76	50	0	0	50	1.00
624002--624037	2	18.0	2	100	0	72	50	0	0	50	1.00
624181--624220	2	20.0	2	100	0	80	50	0	0	50	1.00
629676--629737	32	1.9	33	86	3	90	27	11	17	43	1.83
630405--630450	21	2.2	21	84	7	58	26	30	4	39	1.75
632255--632280	13	2.0	13	100	0	52	38	15	15	30	1.88
634350--634380	15	2.1	15	93	0	53	12	22	16	48	1.80
636183--636227	21	2.1	21	84	8	56	22	20	4	53	1.63
638452--638477	13	2.0	13	100	0	52	30	15	15	38	1.88
638432--638495	32	2.0	33	87	3	94	28	14	17	40	1.88
639268--639295	9	3.1	9	100	0	56	78	0	21	0	0.75
647592--647616	11	2.3	11	100	0	50	44	24	0	32	1.54
652553--652597	22	2.0	23	87	8	67	48	4	0	46	1.22
662906--663558	55	11.4	55	82	9	681	25	20	27	27	1.99
662929--663558	171	3.7	172	85	6	848	24	20	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
662905--663558	116	5.7	116	84	6	805	25	20	27	27	1.99
663155--663243	29	3.2	29	62	26	73	21	20	31	26	1.98
664425--664520	18	5.2	18	86	8	113	0	4	6	89	0.58
664432--664520	26	3.5	24	88	8	115	0	3	6	89	0.57
664511--664537	14	1.9	14	100	0	54	14	3	7	74	1.18
664434--664534	18	5.6	17	82	13	87	1	3	6	87	0.74
664425--664520	1	96.0	1	78	0	102	0	4	6	89	0.58
689616--689786	51	3.3	51	79	4	198	32	11	26	29	1.92
689769--689844	27	2.8	28	88	6	102	21	21	34	23	1.97
692303--692328	13	2.0	13	100	0	52	38	15	15	30	1.88
692282--692348	33	2.0	33	88	0	98	43	16	14	25	1.86
692368--692435	19	3.9	18	73	23	74	36	14	13	35	1.85
692371--692433	32	2.0	32	93	0	108	34	15	14	34	1.88
692471--692552	21	4.1	20	85	6	112	31	12	18	37	1.87
698443--698508	32	2.0	33	88	2	98	36	10	15	37	1.82
698549--698573	13	1.9	13	100	0	50	32	16	16	36	1.90
698582--698706	52	2.4	52	97	0	232	35	18	18	28	1.94
701954--701983	13	2.3	13	94	0	51	20	0	3	76	0.92
702921--703244	170	1.9	170	88	1	488	32	6	8	52	1.58
703447--703499	27	2.0	25	86	13	72	49	1	0	49	1.12
703571--703622	26	2.1	25	82	13	63	51	0	1	46	1.12
704163--704200	19	2.1	19	95	5	69	55	2	0	42	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
704162--704216	22	2.4	23	75	6	58	58	1	0	40	1.09
704332--704399	24	3.1	24	72	23	78	48	1	0	50	1.10
704421--704504	16	4.8	16	69	25	55	48	1	0	50	1.08
704652--704696	23	2.0	23	91	4	74	51	0	4	44	1.21
704669--704713	15	2.8	17	74	22	51	51	0	6	42	1.28
704810--704855	20	2.4	19	86	13	67	45	0	0	54	0.99
704817--704861	20	2.2	21	84	11	58	44	0	2	53	1.13
704969--705042	14	5.0	14	69	21	53	43	1	2	52	1.23
705020--705067	17	2.8	17	77	3	51	45	0	2	52	1.12
705018--705065	24	2.0	25	87	4	71	45	0	4	50	1.21
705094--705123	16	1.9	16	93	6	53	50	0	0	50	1.00
713088--713143	16	3.5	16	87	0	76	32	1	10	55	1.45
713808--713881	37	2.0	38	86	2	105	62	6	10	20	1.50
721614--721830	34	6.4	34	86	2	276	25	7	26	40	1.82
721614--721830	102	2.1	101	89	3	337	25	7	26	40	1.82
726241--726459	34	6.5	34	84	2	262	25	7	26	41	1.82
726241--726459	102	2.2	101	88	1	321	25	7	26	41	1.82
727389--727506	58	2.0	59	95	1	211	43	15	13	27	1.84
727514--727543	2	15.0	2	92	0	51	53	0	0	46	1.00
731522--731670	75	2.0	75	94	2	264	29	16	16	38	1.90
734060--734100	6	6.8	6	97	0	64	48	12	0	39	1.41
734174--734213	21	2.0	21	85	9	57	27	7	0	65	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
737713--737766	27	2.0	27	85	3	72	53	7	0	38	1.29
737728--737782	27	2.0	26	83	13	67	54	7	0	38	1.28
737851--737886	14	2.5	14	86	4	54	52	5	0	41	1.24
741076--741114	20	2.0	20	85	10	53	38	7	5	48	1.54
741710--741748	18	2.1	19	85	4	53	51	2	2	43	1.29
742946--743000	28	1.9	29	82	10	69	36	0	3	60	1.15
746794--746824	16	1.9	16	93	0	53	58	9	3	29	1.46
755650--755690	14	3.0	13	86	10	55	29	4	14	51	1.63
756036--756066	4	7.5	4	92	7	53	25	0	0	74	0.82
756176--756267	16	5.7	15	71	20	62	19	2	7	70	1.22
756176--756252	29	2.6	31	83	10	106	18	2	9	70	1.26
756525--756567	21	2.0	23	86	9	63	51	0	0	48	1.00
763369--763434	3	20.3	3	77	11	51	24	3	4	68	1.23
764595--764621	14	1.9	14	100	0	54	37	11	7	44	1.68
765986--766024	13	3.1	13	81	7	53	69	0	0	30	0.89
766887--766933	22	2.1	23	84	7	62	48	2	0	48	1.13
767042--767097	5	10.8	5	78	14	60	60	1	0	37	1.07
767046--767105	18	3.2	18	76	23	70	60	1	0	38	1.07
767033--767124	38	2.5	37	78	16	118	58	1	2	38	1.17
769429--769473	20	2.2	20	88	0	63	31	4	0	64	1.13
769790--769836	19	2.5	19	85	0	58	38	0	4	57	1.18
769801--769852	27	2.0	26	84	3	68	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
770046--770074	14	2.1	14	93	6	51	82	0	0	17	0.66
770597--770640	14	3.1	14	96	3	79	61	2	0	36	1.09
770599--770659	29	2.1	28	81	3	68	68	1	1	27	1.08
771945--772004	30	2.0	30	96	0	111	45	6	18	30	1.75
773003--773072	15	4.4	17	71	20	51	42	2	0	54	1.15
773010--773038	14	2.0	15	93	6	51	44	0	0	55	0.99
773004--773111	47	2.3	47	85	6	130	43	3	0	51	1.25
773534--773588	23	2.5	22	91	8	94	45	3	0	50	1.19
773913--773972	22	2.7	22	84	7	77	28	1	5	65	1.23
773976--774043	33	2.0	34	86	8	95	48	1	0	50	1.10

Tables:   1   2   3   4   5