genome.fa.s370.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold370
Parameters: 2 7 7 80 10 50 1000
Length:  857924

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 617 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310067--310099	17	2.0	17	88	5	50	54	0	6	39	1.25
311262--311289	6	4.7	6	100	0	56	46	0	0	53	1.00
311583--311692	32	3.5	31	90	6	166	20	9	3	66	1.35
311932--312127	5	40.2	5	66	20	62	38	1	2	57	1.19
311914--312034	42	2.9	42	73	20	110	40	0	2	57	1.12
312010--312043	3	11.0	3	93	6	59	35	0	0	64	0.94
312020--312083	9	6.8	10	81	15	57	40	3	0	56	1.15
312499--312525	2	13.5	2	100	0	54	51	0	0	48	1.00
314434--314504	26	2.7	27	73	4	72	32	15	28	23	1.95
316856--317000	52	2.9	52	83	6	165	44	11	13	30	1.79
317877--318036	78	2.0	80	84	7	211	35	16	14	33	1.89
321763--321803	18	2.2	19	95	4	75	43	21	24	9	1.83
322691--322729	20	2.0	20	94	0	69	46	5	7	41	1.55
322828--322891	33	2.0	32	84	3	83	42	14	14	29	1.84
322997--323041	23	1.9	23	86	4	63	37	8	11	42	1.72
323232--323822	102	5.8	100	72	6	280	26	19	19	34	1.96
323345--324112	51	15.1	49	73	9	267	24	17	21	35	1.95
323602--324798	155	7.8	152	75	7	589	24	18	21	35	1.96
323381--324806	52	27.8	51	73	5	628	24	18	22	35	1.96
323225--324798	103	15.4	102	72	9	719	25	18	21	34	1.96
324584--324794	106	2.0	106	81	5	248	25	18	22	33	1.97
323239--324819	51	30.9	51	73	7	185	24	18	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325802--325862	32	1.9	32	86	6	88	40	13	24	21	1.88
325688--325994	144	2.1	144	81	1	346	39	12	23	24	1.90
325908--325979	16	4.5	17	67	18	55	41	16	23	18	1.89
325915--325989	32	2.3	32	82	8	82	41	14	25	18	1.89
338941--339003	32	1.9	34	87	12	96	31	15	14	38	1.88
339085--339109	13	1.9	13	100	0	50	36	8	16	40	1.77
339119--339157	20	2.0	19	90	5	60	30	7	23	38	1.83
341073--341115	23	2.0	21	82	17	52	76	6	11	4	1.13
344557--344597	20	2.0	21	85	9	57	7	31	43	17	1.76
344868--344907	20	2.0	19	85	9	53	42	0	20	37	1.52
345031--345068	13	2.9	13	88	0	58	36	18	13	31	1.89
345266--345296	8	3.8	8	95	4	53	61	25	0	12	1.32
347409--347449	21	2.0	21	85	9	57	39	12	9	39	1.76
347489--347559	20	3.6	19	77	7	70	39	16	14	29	1.88
347529--347665	53	2.6	53	95	1	238	37	18	16	27	1.92
347711--347762	21	2.4	22	93	6	97	26	23	11	38	1.89
347765--347858	48	2.0	47	81	12	111	31	21	10	36	1.88
347834--347872	13	3.0	13	84	0	60	33	12	17	35	1.88
352669--352694	13	2.0	13	100	0	52	30	15	15	38	1.88
356882--356914	13	2.6	13	95	4	59	36	6	24	33	1.80
358640--358666	13	2.1	13	100	0	54	29	22	14	33	1.94
360791--360874	21	4.0	22	73	17	72	42	5	7	44	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360758--361497	119	6.5	104	70	20	302	42	11	7	39	1.69
360862--361645	119	6.6	119	77	8	719	41	11	7	38	1.71
360771--361502	234	3.2	233	83	6	854	41	11	7	39	1.70
363199--363239	21	1.9	22	85	14	59	34	19	2	43	1.64
368651--368676	13	2.0	13	100	0	52	30	15	15	38	1.88
369383--369426	21	2.1	21	83	8	54	25	31	4	38	1.76
371231--371256	13	2.0	13	100	0	52	38	15	15	30	1.88
371242--371320	20	3.7	20	76	15	77	44	15	13	26	1.84
373335--373365	15	2.1	15	93	0	53	12	22	16	48	1.80
375168--375212	21	2.1	21	84	8	56	20	20	4	55	1.60
377438--377463	13	2.0	13	100	0	52	30	15	15	38	1.88
380641--380666	2	13.0	2	100	0	52	50	0	0	50	1.00
382836--382875	20	2.0	20	100	0	80	25	30	10	35	1.88
383617--383657	2	21.0	2	95	5	75	48	0	0	51	1.00
392272--392400	52	2.5	52	96	0	231	30	17	17	34	1.93
392272--392420	52	2.9	51	89	4	219	31	17	17	33	1.93
392472--392529	20	3.0	20	84	2	73	46	13	10	29	1.77
393021--393070	20	2.5	21	81	18	70	64	4	16	16	1.44
393025--393070	19	2.4	18	92	7	74	65	4	15	15	1.43
397944--397991	17	2.9	16	82	11	53	4	18	0	77	0.93
397944--397980	8	4.3	9	86	10	51	2	16	0	81	0.81
401267--401358	35	2.8	34	71	17	86	53	2	1	43	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401235--401362	22	6.0	21	73	16	93	50	1	0	47	1.16
401272--401369	33	3.0	33	74	21	100	52	3	1	43	1.23
401248--401375	10	11.6	10	68	22	62	50	3	0	45	1.22
401449--401505	29	2.0	29	89	0	87	50	3	1	43	1.29
401472--401507	17	2.0	19	89	10	58	52	2	0	44	1.15
403673--403732	14	4.1	16	66	24	51	61	1	0	36	1.06
406983--407026	22	2.0	22	86	8	63	40	0	0	59	0.98
407364--407475	31	3.7	31	78	9	106	37	2	1	58	1.23
407395--407468	22	3.4	22	77	7	96	36	1	2	59	1.20
407409--407465	28	2.0	28	86	0	78	35	1	3	59	1.25
407353--407480	16	8.2	16	74	12	115	37	2	1	58	1.20
407352--407474	22	5.7	21	69	16	83	36	2	1	59	1.20
407508--407541	16	2.1	16	94	0	59	41	2	2	52	1.31
408093--408135	21	2.2	19	87	8	59	46	2	2	48	1.27
411230--411259	13	2.3	13	94	0	51	10	13	0	76	1.01
412196--412225	12	2.4	13	88	11	53	56	0	0	43	0.99
413731--413791	27	2.3	27	86	11	81	45	4	1	47	1.34
414273--414315	17	2.6	18	85	10	56	55	0	0	44	0.99
414285--414315	16	1.9	16	93	0	53	61	0	0	38	0.96
414278--414334	27	2.1	27	84	12	73	61	0	0	38	0.96
414518--414555	15	2.6	16	88	12	55	60	0	0	39	0.97
414564--414625	24	2.7	23	75	9	63	50	0	3	46	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415030--415178	34	4.4	33	82	5	163	42	27	6	24	1.78
415030--415179	68	2.2	68	90	0	228	42	27	6	24	1.77
419282--419332	19	2.8	19	85	8	63	35	15	17	31	1.92
419660--419780	34	3.6	34	75	6	120	46	21	3	28	1.67
419750--419810	23	2.7	22	73	9	61	52	19	1	26	1.55
425681--425723	21	2.0	21	83	16	54	41	2	2	53	1.26
426342--426407	31	2.1	31	86	8	89	36	3	1	59	1.22
427382--427420	2	19.5	2	100	0	78	51	0	0	48	1.00
427858--428723	108	8.0	107	88	2	1171	28	18	19	33	1.95
427808--428723	323	2.8	321	87	3	1295	28	18	19	33	1.95
429402--429452	23	2.3	22	79	3	57	1	31	0	66	1.03
429409--429451	22	1.9	23	85	4	61	2	27	0	69	1.00
430473--430876	28	15.2	28	73	13	248	21	16	27	34	1.95
430545--430593	24	2.0	24	84	0	62	22	18	26	32	1.97
430473--430876	54	7.6	54	69	11	237	21	16	27	34	1.95
430807--430876	25	2.7	26	91	4	106	18	17	34	30	1.94
430629--430874	80	3.1	77	70	10	190	21	16	27	34	1.95
431747--431780	5	6.4	5	90	10	50	79	0	0	20	0.73
431742--431786	24	1.9	23	90	4	72	80	0	0	20	0.72
431747--431789	11	4.0	11	85	11	54	79	0	0	20	0.74
431747--431806	16	3.7	16	76	20	54	76	0	1	21	0.87
431747--431798	21	2.3	23	80	12	54	76	0	1	21	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431773--431806	4	8.8	4	87	6	52	76	0	2	20	0.92
432671--432784	56	2.0	56	94	0	201	28	19	31	21	1.97
445107--445152	21	2.2	21	88	0	65	30	32	0	36	1.58
446903--446941	13	3.0	13	88	0	60	38	15	15	30	1.88
450495--450520	13	2.0	13	100	0	52	38	15	15	30	1.88
450477--450541	34	2.0	33	90	6	105	46	15	10	27	1.79
454587--454617	15	2.1	15	93	0	53	48	16	22	12	1.80
456700--456763	13	4.9	13	86	7	85	37	17	12	32	1.87
456700--456763	26	2.5	26	92	0	101	37	17	12	32	1.87
456875--456920	21	2.2	20	81	11	58	32	19	4	43	1.71

Tables:   1   2   3   4   5   6