genome.fa.s372.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold372
Parameters: 2 7 7 80 10 50 1000
Length:  1060101

Tables:   1   2   3   4   5   6   7   8   9   

This is table  5  of  9  ( 1049 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
553857--553898	22	1.9	22	85	0	57	45	9	2	42	1.49
554340--554393	18	2.8	19	81	13	67	64	0	0	35	0.94
554526--554599	21	3.3	23	77	11	64	58	0	0	41	0.98
554534--554603	21	3.1	22	80	14	72	61	0	0	38	0.96
554534--554607	11	6.2	12	71	21	57	60	0	0	39	0.97
554533--554605	17	3.9	19	76	16	73	60	0	0	39	0.97
554571--554695	26	4.5	26	71	19	85	51	0	0	48	1.06
554519--554645	31	4.5	29	69	23	76	53	0	1	44	1.10
555198--555241	21	2.0	22	86	4	63	43	6	0	50	1.29
555767--555805	18	2.2	18	90	0	60	43	0	2	53	1.14
555761--555806	22	2.1	21	84	11	58	41	0	2	56	1.11
555820--555882	32	1.9	33	84	15	87	46	1	1	50	1.20
555825--555903	38	2.1	38	90	0	122	43	2	5	49	1.38
555899--555976	27	3.0	24	74	14	66	43	0	2	53	1.14
556828--556902	11	6.5	11	73	22	57	64	1	0	34	1.02
556828--556965	20	6.9	21	75	20	86	63	0	0	35	1.00
556844--556909	31	2.1	31	86	5	89	63	1	0	34	1.04
556848--556965	8	14.5	8	72	24	61	63	0	0	35	1.00
556848--556983	13	9.1	14	72	22	68	63	0	0	36	1.00
556820--557005	20	8.9	20	70	18	85	60	1	1	37	1.11
558785--558829	21	2.1	21	84	8	56	35	4	0	60	1.17
559324--559381	22	2.6	22	77	22	59	39	0	1	58	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
559366--559442	34	2.4	31	80	8	84	50	0	1	48	1.09
559372--559433	29	2.1	30	85	11	83	46	0	1	51	1.10
559497--559559	22	3.0	21	73	15	58	49	0	0	50	1.00
559506--559559	22	2.5	20	82	8	63	50	0	0	50	1.00
562336--562364	15	1.9	15	100	0	58	34	10	20	34	1.87
564682--564723	14	2.9	15	82	7	59	59	0	11	28	1.33
565210--565250	2	21.0	2	90	5	66	51	0	2	46	1.14
569415--569484	20	3.5	20	78	21	83	60	0	0	40	0.97
569434--569477	16	2.8	16	79	3	54	59	0	0	40	0.98
569436--569512	19	4.1	19	81	17	81	63	0	0	36	0.95
569433--569512	11	7.9	10	69	13	56	63	0	0	36	0.94
569415--569512	30	3.2	31	80	5	103	62	0	0	37	0.96
575980--576009	7	4.4	7	91	8	53	13	0	0	86	0.57
575980--576009	13	2.2	13	94	5	51	13	0	0	86	0.57
576356--576396	10	3.9	10	84	9	55	48	0	0	51	1.00
576709--576765	18	3.4	18	72	18	61	64	0	0	35	0.93
576733--576757	13	1.9	13	100	0	50	56	0	0	44	0.99
576730--576805	22	3.4	21	73	21	66	55	0	0	44	0.99
576730--576796	22	3.1	22	77	10	75	56	0	0	43	0.99
577177--577207	2	15.5	2	93	0	53	51	0	3	45	1.17
577383--577487	41	2.5	44	80	14	107	41	1	4	51	1.34
579671--579715	15	2.8	17	74	16	51	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
580262--580294	9	3.6	9	92	8	57	21	0	0	78	0.75
580635--580726	28	3.4	27	73	14	75	41	0	1	57	1.06
580862--580907	11	4.2	11	81	10	58	36	0	0	63	0.95
580857--580929	27	2.7	26	80	17	87	38	0	1	60	1.06
580869--580950	22	3.8	21	75	15	78	41	0	1	57	1.06
581778--581817	2	20.0	2	90	10	64	47	2	0	50	1.14
582352--582393	16	2.7	15	88	7	57	50	2	0	47	1.14
582352--582404	16	3.5	15	82	14	56	50	1	0	47	1.12
583216--583262	20	2.4	19	80	16	51	38	0	0	61	0.96
584209--584242	13	2.5	14	90	4	52	58	0	0	41	0.98
584476--584518	17	2.5	17	88	7	61	55	0	0	44	0.99
601287--601324	20	1.9	20	89	10	60	60	0	0	39	0.97
601276--601359	23	3.5	23	76	10	71	53	1	1	44	1.16
601626--601669	11	3.9	11	85	11	54	45	0	0	54	0.99
601614--601706	20	4.7	19	76	16	82	39	0	1	59	1.05
601620--601753	10	13.6	10	70	18	68	41	0	0	57	1.04
602731--602790	31	1.9	32	86	10	88	63	0	0	36	0.95
602788--602822	6	5.7	6	96	3	61	37	0	0	62	0.95
602820--602858	18	2.2	17	86	9	51	38	2	2	56	1.27
603018--603195	82	2.3	81	80	10	192	47	6	3	42	1.46
603237--603304	30	2.3	28	85	10	82	42	0	0	57	0.98
603771--603806	14	2.4	14	90	9	54	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
603802--603849	17	2.7	18	78	12	55	37	0	2	60	1.09
604426--604472	19	2.5	19	80	10	53	40	4	0	55	1.19
604634--604695	25	2.4	26	83	5	81	59	0	0	40	0.97
604709--604755	19	2.7	18	80	12	53	36	0	2	61	1.08
605178--607330	124	17.4	124	91	0	3359	39	14	7	37	1.75
605432--605617	56	3.1	56	65	21	133	35	14	11	38	1.82
606317--606893	56	9.4	56	64	21	196	40	12	7	38	1.73
606868--607348	68	7.7	65	64	24	198	41	14	7	36	1.74
607437--607514	25	3.1	23	82	14	68	37	1	0	61	1.04
607443--607515	34	2.1	36	82	10	89	38	1	0	60	1.06
607439--607515	18	4.5	17	76	12	77	37	1	0	61	1.05
607475--607526	26	2.0	27	85	11	72	40	0	0	59	0.97
607443--607526	26	3.2	26	79	17	70	39	1	0	59	1.05
607513--607550	18	2.1	18	90	9	60	55	0	0	44	0.99
607998--608060	23	2.7	23	78	7	65	46	0	1	52	1.10
608039--608077	15	2.4	16	91	8	62	33	0	0	66	0.92
608553--608610	21	2.7	22	76	12	68	68	0	1	29	0.99
608558--608613	13	4.1	13	75	11	58	67	0	1	30	1.01
608844--608938	28	3.4	27	72	20	81	62	0	0	37	0.96
608864--608934	20	3.6	20	81	5	74	59	0	0	40	0.98
608869--608910	16	2.9	16	80	20	56	61	0	0	38	0.96
608865--608934	21	3.5	20	77	9	65	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
609482--609511	12	2.6	12	94	5	53	46	0	0	53	1.00
610163--610268	35	3.1	33	73	14	99	57	0	0	41	1.05
610187--610275	24	3.6	25	73	13	87	55	0	1	43	1.07
612964--613027	23	2.7	25	81	13	73	59	1	0	39	1.07
612986--613051	23	2.8	23	84	9	71	54	0	1	43	1.09
613255--613315	25	2.4	26	83	8	72	59	1	0	39	1.08
613275--613325	25	2.0	25	81	14	59	56	0	1	41	1.10
613330--613376	19	2.7	18	80	12	53	36	0	2	61	1.08
614124--614172	11	4.5	11	86	0	62	40	0	0	59	0.98
614101--614157	28	2.0	29	86	3	80	36	0	0	63	0.95
614152--614204	15	3.2	17	82	15	67	49	0	0	50	1.00
614377--614406	14	2.1	14	93	0	51	70	0	0	30	0.88
616596--616633	15	2.7	15	84	8	53	55	0	0	44	0.99
617690--617754	30	2.2	30	85	0	85	18	6	26	49	1.71
618471--618521	20	2.4	21	80	12	59	49	0	0	50	1.00
619835--619888	22	2.4	23	81	9	67	42	0	0	57	0.98
620732--620791	31	2.0	30	86	3	84	56	0	1	41	1.09
620745--620810	31	2.1	31	86	5	89	50	0	3	46	1.16
621563--621633	37	2.0	37	83	5	92	61	1	0	36	1.05
621588--621662	31	2.5	30	80	18	77	64	2	0	33	1.08
621680--621726	9	4.7	10	78	17	53	0	21	2	76	0.89
621787--621816	4	7.5	4	92	0	51	30	0	43	26	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
621819--621843	3	8.3	3	100	0	50	64	0	0	36	0.94
622186--622260	6	13.3	6	71	18	54	64	1	0	34	1.02
622192--622250	23	2.7	22	89	5	84	66	0	0	33	0.92
622215--622352	32	4.3	32	74	14	108	55	1	0	43	1.08
622283--622341	18	3.2	18	73	23	59	50	0	0	49	1.00
622238--622336	43	2.3	41	80	15	103	51	2	0	46	1.12
622556--622594	19	2.0	20	85	14	55	38	0	2	58	1.12
631615--632678	210	5.1	209	88	3	1425	29	17	19	33	1.95
632386--633008	330	1.9	330	92	1	1052	29	17	18	34	1.94
632716--633537	210	3.9	210	89	1	1245	28	18	19	32	1.96

Tables:   1   2   3   4   5   6   7   8   9