genome.fa.s372.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold372
Parameters: 2 7 7 80 10 50 1000
Length:  1060101

Tables:   1   2   3   4   5   6   7   8   9   

This is table  7  of  9  ( 1049 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
818414--818486	13	5.6	13	78	0	83	36	6	41	15	1.73
818410--818486	26	2.9	26	94	1	127	36	6	40	16	1.75
818566--818636	28	2.6	26	82	10	88	50	19	4	25	1.65
818581--818642	28	2.2	29	94	2	108	56	17	4	20	1.59
819471--819511	20	2.1	20	90	4	66	34	0	0	65	0.93
820363--820417	12	4.6	12	76	14	51	34	0	0	65	0.93
822197--822283	21	4.3	21	73	13	67	58	0	3	37	1.15
822197--822289	42	2.2	43	79	7	111	56	0	3	39	1.15
824138--824209	24	2.9	24	83	10	74	43	22	9	25	1.83
827009--827098	35	2.5	35	75	15	85	48	1	3	46	1.25
827042--827097	15	3.9	15	74	9	53	51	0	1	46	1.11
827042--827104	28	2.2	29	77	8	76	52	0	1	46	1.10
832162--832228	24	3.1	21	78	14	73	58	0	0	41	0.98
832291--832353	27	2.3	28	81	8	76	46	1	0	52	1.10
832764--832811	12	4.2	11	79	10	51	58	0	0	41	0.98
834112--834163	11	4.2	12	76	23	54	40	0	0	59	0.97
834113--834197	28	3.0	30	79	14	85	44	0	0	55	0.99
834136--834211	39	1.9	39	84	10	102	44	0	0	55	0.99
836274--836314	16	2.4	18	80	12	50	53	0	2	43	1.13
836603--836665	17	3.4	19	74	14	60	49	0	0	50	1.00
836546--836645	50	2.0	50	80	7	114	48	0	0	52	1.00
840415--840468	28	2.0	27	82	10	65	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
856188--856267	36	2.3	35	81	12	85	71	10	13	5	1.29
856519--856546	14	2.0	14	100	0	56	85	14	0	0	0.59
857598--858066	27	17.2	27	91	2	715	22	33	13	29	1.93
857598--858066	55	8.6	54	91	2	715	22	33	13	29	1.93
857598--858066	82	5.7	81	92	2	751	22	33	13	29	1.93
858067--858455	27	14.2	27	90	2	571	23	33	14	28	1.94
858006--858133	67	1.9	67	96	0	238	20	34	14	31	1.92
858067--858455	55	7.1	55	89	2	586	23	33	14	28	1.94
858067--858437	82	4.5	81	90	2	571	22	34	14	29	1.93
858441--858851	32	12.8	32	93	1	662	31	33	18	16	1.93
863107--863167	27	2.4	27	84	10	76	52	14	6	26	1.66
863327--863388	21	3.0	21	83	6	65	64	1	1	32	1.13
863353--863432	21	3.8	21	74	11	65	52	1	3	42	1.27
863406--863462	27	2.1	29	81	15	68	52	0	1	45	1.11
864018--864081	34	1.9	33	87	9	94	51	1	0	46	1.10
864151--864195	21	2.0	22	83	8	56	37	4	0	57	1.19
866419--866446	4	7.0	4	100	0	56	25	0	50	25	1.50
866838--866923	15	5.4	17	70	21	62	56	1	1	40	1.14
867032--867074	2	21.5	2	90	0	68	53	2	0	44	1.13
867746--867818	37	2.0	36	86	2	101	39	4	8	47	1.52
868478--868518	21	2.0	21	95	0	73	21	4	14	58	1.55
872551--872584	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
877081--877121	20	2.1	20	90	4	66	34	0	0	65	0.93
879277--879368	14	6.4	14	70	18	73	48	1	0	50	1.08
879292--879379	31	3.2	27	71	14	81	47	1	0	51	1.08
879264--879369	10	10.4	10	70	15	56	50	0	0	49	1.07
879264--879382	10	10.5	11	66	20	50	49	0	0	49	1.06
880061--880107	12	4.2	11	79	12	51	57	0	0	42	0.98
880161--880216	22	2.5	23	82	5	71	51	3	0	44	1.18
881507--881531	2	12.5	2	100	0	50	48	0	0	52	1.00
881564--881636	27	2.7	27	87	6	94	23	6	23	46	1.76
881564--881637	28	2.7	27	87	6	96	22	6	24	45	1.76
886053--886123	28	2.6	28	81	2	90	25	4	22	47	1.69
886053--886114	27	2.3	27	85	2	79	22	3	22	51	1.62
888062--888093	16	2.0	16	93	0	55	46	0	0	53	1.00
890090--890312	94	2.4	94	81	3	252	40	14	21	23	1.90
891138--891170	18	1.9	17	88	11	50	42	0	0	57	0.98
891169--891230	26	2.3	27	75	10	65	54	0	0	45	0.99
891205--891251	20	2.3	20	85	0	58	53	0	0	46	1.00
893822--893859	20	2.0	20	89	5	60	55	0	0	44	0.99
895590--895651	28	2.2	28	91	5	99	33	3	3	59	1.29
900171--900232	28	2.2	28	91	5	99	19	6	19	54	1.65
900757--900795	20	2.0	20	89	0	60	69	2	0	28	1.02
901492--901534	20	2.0	22	86	8	63	30	4	0	65	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
902460--902512	12	4.6	12	74	9	56	30	0	0	69	0.88
902976--903021	19	2.4	19	88	0	74	36	10	10	41	1.75
903540--903595	17	3.4	16	78	9	58	55	0	0	44	0.99
906524--906551	2	14.0	2	100	0	56	50	0	0	50	1.00
906756--906809	22	2.3	24	84	9	67	48	0	1	50	1.11
907622--907664	19	2.3	19	84	8	52	65	2	0	32	1.06
908500--908539	21	1.9	21	85	10	55	40	2	0	57	1.12
909813--909866	15	3.5	15	75	20	58	57	0	0	42	0.98
909833--909909	39	2.0	39	87	5	111	51	0	0	48	1.00
910784--910824	17	2.3	19	87	8	59	51	2	0	46	1.14
910772--910958	22	7.7	23	66	22	64	57	0	1	40	1.10
910791--910950	11	14.5	11	71	16	73	59	0	0	40	1.02
910831--910898	32	2.1	33	86	2	93	58	0	0	41	0.98
910812--910941	17	7.5	19	66	26	60	60	0	0	40	0.97
910849--910901	20	3.1	18	76	17	51	56	0	0	43	0.99
910856--910924	20	3.7	19	74	18	58	53	0	0	46	1.00
910907--910958	16	3.1	17	78	16	54	63	0	1	34	1.06
911154--911193	19	2.1	19	86	9	55	47	0	0	52	1.00
911140--911237	27	3.7	27	73	20	91	41	0	0	58	0.98
911148--911388	131	1.8	128	84	7	295	37	1	3	57	1.25
912938--912972	19	1.9	18	88	11	54	54	11	0	34	1.37
913022--913192	85	2.0	85	95	0	306	35	13	12	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
913670--913764	27	3.5	27	78	11	95	51	0	0	48	1.00
913693--913755	23	2.8	24	79	18	71	57	0	0	42	0.99
913795--913839	17	2.7	16	77	12	54	31	0	2	66	1.04
913813--913888	13	5.5	13	75	10	64	39	1	0	59	1.06
913820--913876	26	2.2	26	96	0	105	42	0	0	57	0.98
914467--914519	19	3.1	18	86	10	67	35	0	1	62	1.06
914464--914519	15	3.9	15	77	15	64	37	0	1	60	1.07
914524--914579	28	2.0	28	86	6	78	35	1	0	62	1.06
918053--918104	23	2.2	25	77	16	58	55	0	0	44	0.99
918066--918116	24	2.3	22	83	12	68	54	0	0	45	0.99
918085--918159	31	2.6	29	76	14	73	54	0	0	45	0.99
918129--918167	16	2.5	15	84	12	51	56	0	0	43	0.99
919216--919267	21	2.4	23	81	15	67	40	1	9	48	1.47
919333--919369	16	2.5	15	84	16	51	54	0	0	45	1.00
920596--920624	14	2.0	15	93	6	51	62	0	0	37	0.96
922734--922765	17	1.9	16	93	6	55	34	0	0	65	0.93
923174--923226	21	2.7	20	81	16	65	54	0	0	45	0.99
923872--923920	14	3.4	14	80	2	53	55	0	0	44	0.99
923867--923920	28	2.0	28	85	3	74	53	0	0	46	1.00
924582--924623	21	2.0	22	90	4	68	42	4	0	52	1.22
925179--925258	20	4.3	18	74	16	65	56	0	1	42	1.07
925211--925268	18	3.4	18	72	18	61	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
925204--925262	24	2.4	23	83	8	73	57	0	0	42	0.98
925215--925262	25	2.0	24	83	8	53	56	0	0	43	0.99
925612--925683	27	2.8	26	70	14	69	50	2	4	43	1.36
925963--926008	6	7.7	6	90	0	65	26	6	32	34	1.82
925964--926008	12	3.8	12	90	0	72	24	6	33	35	1.82
925963--926008	18	2.6	18	92	0	83	26	6	32	34	1.82
926390--926439	10	5.0	10	85	0	64	34	0	8	58	1.28
926452--926519	24	2.7	25	74	17	70	32	0	1	66	1.01
926779--926816	19	2.1	19	90	5	60	63	0	0	36	0.95
926785--926848	16	4.2	16	76	15	55	59	1	0	39	1.07

Tables:   1   2   3   4   5   6   7   8   9