genome.fa.s372.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold372
Parameters: 2 7 7 80 10 50 1000
Length:  1060101

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1049 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
993150--993189	16	2.5	16	79	0	53	50	2	2	45	1.28
993734--993794	7	8.7	7	77	13	54	45	0	0	54	1.00
993734--993812	21	3.8	21	72	13	65	48	0	0	51	1.00
993734--993816	28	3.0	28	84	8	91	45	0	0	54	0.99
993873--993918	21	2.1	22	84	11	60	39	4	0	56	1.19
997922--997965	15	2.9	15	86	0	61	25	25	38	11	1.89
1000768--1000825	22	2.6	22	80	2	62	43	1	0	55	1.10
1000796--1000827	16	2.1	15	94	5	55	53	0	0	46	1.00
1000811--1000892	33	2.5	33	78	13	80	46	2	0	51	1.14
1001062--1001107	23	1.9	23	82	8	56	65	2	2	30	1.16
1001073--1001125	23	2.2	26	83	10	67	62	0	0	37	0.96
1001101--1001177	27	2.8	27	73	13	77	54	1	0	44	1.08
1001586--1001636	19	2.7	19	82	14	61	54	0	1	43	1.11
1001578--1001618	13	3.1	14	82	10	50	58	0	0	41	0.98
1001586--1001636	18	2.7	19	82	14	61	54	0	1	43	1.11
1001746--1001803	25	2.3	23	76	23	64	46	0	0	53	1.00
1001785--1001878	15	6.2	16	67	19	67	38	0	0	61	0.96
1001760--1001860	27	3.8	26	75	17	84	41	0	0	58	0.98
1001735--1001899	28	5.7	29	72	20	100	41	0	0	58	1.03
1002767--1002796	16	1.9	15	93	6	51	26	0	0	73	0.84
1003368--1003404	18	2.1	18	89	0	56	45	0	16	37	1.47
1003895--1004026	68	1.9	69	83	7	171	55	1	0	43	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1003952--1004229	113	2.4	112	87	8	368	54	2	1	42	1.19
1004201--1004265	23	2.8	23	79	11	78	58	6	3	32	1.38
1003952--1004256	112	2.7	111	80	8	303	55	2	1	40	1.22
1004435--1004595	80	2.0	81	92	1	270	37	19	15	27	1.92
1004631--1004985	120	2.9	121	87	7	486	42	2	1	53	1.23
1006931--1006976	23	2.0	23	95	0	83	34	10	0	54	1.36
1006975--1007066	39	2.3	39	81	10	114	45	6	3	44	1.45
1007461--1007487	14	1.9	14	100	0	54	74	0	0	25	0.83
1007699--1007729	15	2.0	16	93	6	55	67	0	0	32	0.91
1007391--1007744	124	2.9	123	86	9	491	53	1	2	42	1.22
1008026--1008087	23	2.7	23	82	5	72	32	3	6	58	1.40
1008062--1008329	110	2.4	110	80	5	274	44	3	1	50	1.29
1010199--1010238	21	1.9	21	84	0	53	40	2	2	55	1.27
1011160--1011204	17	2.6	17	86	13	65	53	0	0	46	1.00
1013274--1013301	2	14.0	2	100	0	56	50	0	0	50	1.00
1014398--1014445	22	2.1	24	84	7	64	39	0	6	54	1.26
1014884--1015045	11	15.5	11	68	22	93	38	1	1	59	1.13
1014882--1015045	20	7.9	21	69	25	109	38	1	1	59	1.13
1014889--1014957	28	2.4	30	80	11	81	37	0	0	62	0.96
1015377--1015430	19	2.9	19	76	13	58	33	0	1	64	1.04
1015372--1015438	18	3.8	18	70	16	59	34	0	1	64	1.03
1015428--1015452	12	2.1	12	100	0	50	40	0	8	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1015365--1015450	37	2.3	38	78	17	99	36	0	2	61	1.09
1016092--1016134	21	2.1	21	87	12	63	44	0	0	55	0.99
1016136--1016208	28	2.8	25	73	18	69	50	0	0	49	1.00
1016409--1016475	16	4.4	15	75	16	50	62	1	0	35	1.04
1016425--1016471	24	2.0	24	82	0	58	57	2	0	40	1.11
1016804--1016847	19	2.2	20	84	11	56	63	0	2	34	1.07
1017245--1017325	6	14.2	6	70	12	55	61	0	0	38	0.96
1017227--1017340	45	2.5	45	78	4	122	60	0	0	39	0.97
1017652--1017695	16	2.7	16	85	3	52	45	0	0	54	0.99
1017777--1017826	24	2.2	22	85	7	64	42	6	0	52	1.26
1017975--1018024	25	2.0	25	84	7	66	56	0	0	44	0.99
1019049--1019104	29	1.9	29	82	7	69	39	0	1	58	1.08
1019055--1019146	26	3.6	25	77	13	80	46	1	1	51	1.15
1019029--1019111	26	3.0	26	77	19	64	36	0	2	61	1.09
1019086--1019147	28	2.4	26	77	15	65	53	1	1	43	1.20
1019545--1019570	8	3.2	8	100	0	52	38	0	0	61	0.96
1019560--1019584	11	2.3	11	100	0	50	36	0	0	64	0.94
1020951--1021053	51	2.0	51	92	3	172	40	10	10	37	1.75
1022764--1022831	3	22.7	3	100	0	136	33	0	0	66	0.92
1026303--1026328	2	13.0	2	100	0	52	50	0	0	50	1.00
1035678--1035706	14	2.1	14	100	0	58	41	17	20	20	1.90
1036431--1036475	2	22.5	2	100	0	90	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1038248--1038315	23	3.0	23	79	12	68	60	0	1	38	1.06
1038555--1038593	11	3.6	11	80	19	55	51	0	0	48	1.00
1038548--1038593	21	2.2	21	88	3	67	47	0	0	52	1.00
1038608--1038672	29	2.2	30	81	13	73	43	0	0	56	0.99
1038627--1038673	16	3.1	16	81	6	62	38	0	0	61	0.96
1038640--1038685	20	2.3	20	85	7	58	39	0	0	60	0.97
1039157--1039217	11	5.7	11	77	12	56	31	0	0	68	0.89
1039166--1039219	6	9.8	6	77	18	64	31	0	0	68	0.90
1039150--1039223	32	2.3	32	79	6	87	36	0	0	63	0.95
1039428--1039470	6	7.0	6	80	15	52	62	0	0	37	0.95
1041692--1041749	19	3.0	20	78	17	68	67	0	1	31	1.01
1044704--1044739	2	18.0	2	100	0	72	50	0	0	50	1.00
1046104--1046130	2	13.5	2	100	0	54	48	0	0	51	1.00
1046310--1046373	2	32.5	2	84	3	85	50	4	0	45	1.22
1047799--1047864	6	11.2	6	75	18	59	40	0	0	59	0.98
1047804--1047865	17	3.5	19	81	16	62	41	0	0	58	0.98
1052397--1052452	22	2.5	23	97	2	105	62	8	10	17	1.52
1053363--1053437	20	3.8	20	80	3	80	40	12	13	34	1.81
1053360--1053437	40	2.0	39	87	2	111	39	12	12	34	1.82
1053973--1055271	32	40.6	32	95	0	2213	14	18	35	31	1.91
1055250--1055692	27	16.2	27	89	2	652	29	13	32	23	1.94
1055250--1055692	55	8.1	54	89	2	652	29	13	32	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1055249--1055716	137	3.4	136	86	5	638	29	14	32	23	1.94

Tables:   1   2   3   4   5   6   7   8   9

The End!