genome.fa.s372.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold372
Parameters: 2 7 7 80 10 50 1000
Length:  1060101

Tables:   1   2   3   4   5   6   7   8   9   

This is table  8  of  9  ( 1049 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
927222--927279	16	3.7	16	80	17	59	53	0	1	44	1.10
927568--927597	8	3.6	8	91	8	51	83	0	0	16	0.65
932566--932631	28	2.4	26	85	10	78	45	1	1	51	1.19
932768--932831	24	2.6	23	83	14	67	45	9	1	43	1.45
932768--932832	22	2.6	24	79	16	62	46	9	1	43	1.45
932759--932809	22	2.5	21	81	9	61	47	9	0	43	1.36
933502--933556	24	2.2	26	78	12	71	49	0	0	50	1.00
933858--933935	26	2.6	30	73	22	83	52	0	0	47	1.00
933882--933932	26	1.9	27	96	4	95	58	0	0	41	0.98
934796--934840	17	2.6	18	77	19	51	37	0	0	62	0.96
935249--935288	19	2.1	19	90	0	62	22	0	12	65	1.26
935661--935688	6	4.7	6	100	0	56	50	0	0	50	1.00
936127--936186	17	3.3	18	79	13	61	53	1	0	45	1.10
936173--936213	18	2.3	19	79	12	50	53	0	0	46	1.00
936153--936216	32	1.9	33	84	6	85	54	0	0	45	0.99
936476--936537	32	1.9	33	90	3	99	45	0	0	54	0.99
936742--936816	37	2.0	37	85	10	100	52	8	10	29	1.65
938661--938779	59	2.0	60	90	1	186	46	5	9	39	1.58
939471--939516	22	2.1	22	83	0	56	50	6	4	39	1.48
939495--939584	36	2.5	35	77	10	92	45	6	6	41	1.56
939580--939628	16	3.1	16	81	0	62	63	2	0	34	1.06
940145--940190	24	2.0	23	83	12	58	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
940182--940231	26	1.9	26	88	8	75	60	2	0	38	1.09
940271--940370	35	2.9	35	83	14	95	57	1	0	42	1.05
940222--940370	8	18.8	8	70	19	75	60	0	0	38	1.07
940220--940396	83	2.1	83	80	9	209	61	1	1	36	1.11
943165--943201	16	2.2	17	90	4	58	54	0	0	45	1.00
943394--943423	5	6.0	5	100	0	60	60	0	0	40	0.97
944275--944311	19	2.0	18	89	5	56	62	0	0	37	0.96
944648--944692	22	2.0	23	87	12	67	35	0	2	62	1.08
945678--945712	17	2.1	16	89	5	52	37	0	0	62	0.95
946091--946144	27	2.0	28	92	3	92	66	0	0	33	0.92
946185--946225	14	2.8	15	85	7	57	56	0	0	43	0.99
946602--946671	31	2.3	29	84	13	97	41	0	0	58	0.98
946642--946688	18	2.6	18	86	3	58	34	2	2	61	1.20
946669--946712	23	2.0	23	86	8	65	27	4	2	65	1.23
948294--948332	2	19.5	2	89	0	60	48	2	0	48	1.15
948916--948965	10	4.6	11	78	14	59	56	2	0	42	1.11
948916--948976	22	2.8	22	80	2	70	60	1	0	37	1.07
950935--950974	21	2.0	20	85	9	55	40	2	2	55	1.27
952702--952812	10	11.3	10	75	10	86	36	1	2	58	1.23
952735--952833	40	2.5	40	80	8	103	39	2	3	55	1.27
952813--952876	26	2.4	26	80	12	67	42	0	1	56	1.09
952841--952884	21	2.0	22	86	4	63	36	0	2	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
953285--953327	11	3.6	11	77	17	50	39	0	0	60	0.97
953275--953327	25	2.1	25	92	0	88	37	0	3	58	1.16
954892--954991	35	2.9	35	83	14	95	57	1	0	42	1.05
954856--954991	8	17.1	8	71	19	74	60	0	0	38	1.07
958013--958042	5	6.0	5	100	0	60	60	0	0	40	0.97
959616--959668	25	2.1	24	83	10	70	54	0	0	45	0.99
960263--960299	17	2.2	16	90	4	56	37	0	0	62	0.96
960671--960730	11	6.0	11	69	21	51	65	1	1	31	1.13
960783--960817	14	2.6	13	86	8	52	54	0	0	45	0.99
960728--960819	15	5.7	15	71	24	64	51	0	0	48	1.00
961198--961267	31	2.3	29	84	13	97	41	0	0	58	0.98
961238--961284	18	2.6	18	86	3	58	34	2	2	61	1.20
961265--961308	23	2.0	23	86	8	65	27	4	2	65	1.23
962889--962923	2	17.5	2	87	0	52	48	2	0	48	1.16
963509--963558	10	4.6	11	78	14	59	56	2	0	42	1.11
963509--963569	22	2.8	22	80	2	70	60	1	0	37	1.07
965528--965567	21	2.0	20	85	9	55	40	2	2	55	1.27
967305--967415	10	11.3	10	75	10	86	36	1	2	58	1.23
967338--967436	40	2.5	40	80	8	103	39	2	3	55	1.27
967416--967488	26	2.7	26	73	14	67	38	0	1	60	1.06
967888--967930	11	3.6	11	77	17	50	39	0	0	60	0.97
967878--967930	25	2.1	25	92	0	88	37	0	3	58	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
969497--969596	35	2.9	35	83	14	95	57	1	0	42	1.05
969461--969596	8	17.1	8	71	19	74	60	0	0	38	1.07
972389--972425	16	2.2	17	90	4	58	54	0	0	45	1.00
972618--972647	5	6.0	5	100	0	60	60	0	0	40	0.97
973486--973521	18	2.0	18	89	10	56	50	0	8	41	1.33
974240--974292	25	2.1	24	83	10	70	54	0	0	45	0.99
974891--974927	17	2.2	16	90	4	56	37	0	0	62	0.96
975300--975359	11	6.0	11	75	18	60	63	0	1	35	1.05
975303--975366	21	3.2	21	70	22	57	62	0	1	35	1.05
975412--975446	14	2.6	13	86	8	52	54	0	0	45	0.99
975357--975449	15	5.7	15	71	22	64	51	1	0	47	1.07
975832--975943	18	6.1	18	77	13	86	39	0	0	60	0.97
975817--975941	38	3.3	38	68	11	96	38	0	0	61	0.96
975828--975914	27	3.2	27	75	15	81	39	0	0	60	0.97
975838--975961	9	13.5	10	70	24	64	37	0	0	61	1.02
975812--975921	5	21.4	5	67	15	55	38	0	0	60	1.03
975837--975949	29	4.0	29	80	14	121	37	0	0	62	0.95
975817--975930	19	6.1	19	70	20	80	38	0	0	61	0.96
976650--976697	16	2.9	16	81	3	60	41	4	4	50	1.41
977935--977984	26	2.0	25	84	4	64	40	0	0	60	0.97
978155--978195	16	2.6	16	88	0	64	58	0	0	41	0.98
978155--978210	27	2.1	26	83	3	67	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
980157--980196	21	2.0	20	85	9	55	40	2	2	55	1.27
980217--980279	28	2.2	30	78	13	71	49	0	0	50	1.00
980278--980315	20	2.0	19	90	10	60	44	5	7	42	1.56
980575--980636	29	2.2	28	77	5	72	53	0	0	46	1.00
980751--980785	17	2.0	18	88	5	54	45	0	5	48	1.26
980787--980840	22	2.5	20	80	19	63	64	0	0	35	0.94
980773--980840	24	2.9	24	81	14	72	60	0	1	38	1.06
980802--980872	28	2.4	30	81	9	92	64	0	0	35	0.94
981164--981233	32	2.5	25	71	26	68	47	0	0	52	1.00
981157--981224	32	2.1	33	91	8	113	51	0	0	48	1.00
981160--981238	16	5.1	16	70	13	58	48	0	0	51	1.00
981421--981494	37	2.0	37	89	5	114	59	2	9	28	1.42
981618--981653	2	18.0	2	94	0	63	52	0	0	47	1.00
981741--981774	16	2.1	16	88	5	50	50	8	2	38	1.49
984226--984353	16	8.8	16	69	17	82	59	3	0	37	1.13
984237--984317	27	3.0	27	83	5	85	59	4	0	35	1.19
984874--984933	15	4.1	14	82	8	50	60	0	1	38	1.07
984891--985009	15	8.6	14	67	19	54	60	0	0	38	1.03
984902--985003	9	11.1	9	67	21	52	61	0	0	38	0.96
984917--984999	20	4.2	20	72	13	73	61	0	0	38	0.96
984888--985019	48	2.7	48	77	19	132	61	0	0	37	1.02
984944--984989	17	2.8	17	75	15	51	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
984910--984993	40	2.1	40	82	8	100	63	0	0	36	0.95
985001--985038	20	1.9	20	94	0	67	63	2	0	34	1.09
984904--985038	67	2.0	65	79	10	141	62	0	0	37	1.01
986879--986936	26	2.3	25	91	5	91	25	15	25	32	1.95
988800--988845	21	2.1	22	84	4	58	19	30	19	30	1.97
991449--991506	26	2.3	25	91	5	91	25	15	25	32	1.95
991974--992004	7	4.4	7	100	0	62	45	12	12	29	1.80
992434--992474	20	2.0	20	85	0	55	31	2	2	63	1.20
992457--992510	27	2.0	27	82	13	67	44	0	3	51	1.19
992467--992542	32	2.3	32	84	8	91	43	1	3	51	1.28

Tables:   1   2   3   4   5   6   7   8   9