genome.fa.s38.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold38
Parameters: 2 7 7 80 10 50 1000
Length:  2073527

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  15  of  15  ( 1750 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1998882--1998912	5	6.2	5	92	0	53	61	3	0	35	1.12
2001043--2001085	6	6.8	6	86	7	59	37	0	2	60	1.10
2004282--2004311	8	3.9	8	91	8	53	63	0	0	36	0.95
2004278--2004316	16	2.4	16	83	16	53	58	0	0	41	0.98
2004280--2004341	30	1.9	33	81	12	76	56	1	0	41	1.09
2004272--2004360	28	3.3	27	72	19	71	52	5	2	39	1.37
2005932--2005959	3	9.3	3	100	0	56	32	0	0	67	0.91
2006623--2006682	14	4.2	14	73	16	52	53	0	0	46	1.00
2006620--2006671	27	1.9	27	84	7	70	53	0	0	46	1.00
2006722--2006793	29	2.6	27	77	14	74	59	0	1	38	1.06
2006778--2006825	20	2.6	18	83	9	53	54	0	0	45	0.99
2006900--2006945	21	2.1	21	88	8	65	54	0	0	45	0.99
2007180--2007206	2	13.5	2	100	0	54	0	51	0	48	1.00
2008336--2008548	110	1.9	110	94	1	374	23	18	12	45	1.83
2008336--2008553	109	2.0	109	91	3	359	22	19	11	45	1.83
2013998--2014311	157	2.0	158	93	1	542	46	3	6	44	1.45
2014254--2014350	50	1.9	50	83	8	126	47	4	3	45	1.37
2015675--2015721	17	2.8	17	80	6	51	63	0	0	36	0.94
2016328--2016389	23	2.7	23	87	7	81	37	0	0	62	0.95
2016806--2016880	39	1.9	38	82	12	91	40	0	0	60	0.97
2017904--2017952	2	24.5	2	100	0	98	51	0	0	48	1.00
2018848--2018887	20	2.1	19	86	13	55	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2019945--2019998	9	5.8	9	74	8	54	42	3	0	53	1.18
2019936--2019997	29	2.1	29	85	5	81	41	4	0	53	1.22
2019952--2020005	14	3.8	14	78	4	54	38	3	0	57	1.17
2020437--2020490	25	2.0	26	82	10	65	55	0	0	44	0.99
2020450--2020498	26	1.9	25	83	4	62	51	0	4	44	1.20
2021726--2021761	2	18.0	2	94	0	63	47	0	2	50	1.15
2022415--2022465	11	4.5	12	87	9	72	52	0	0	47	1.00
2023252--2023281	15	2.0	15	93	0	51	56	20	13	10	1.65
2025207--2025358	16	9.2	17	68	25	78	55	1	1	41	1.19
2025193--2025362	84	2.0	84	88	0	250	54	1	2	41	1.24
2025962--2025999	16	2.6	14	84	15	51	39	0	0	60	0.97
2027380--2027415	18	1.9	19	88	5	56	47	2	8	41	1.48
2030769--2030844	26	2.9	26	69	13	66	43	1	2	52	1.23
2031051--2031113	13	4.6	13	73	23	58	65	1	0	33	1.03
2031048--2031111	22	3.0	23	73	11	64	64	1	0	34	1.03
2031860--2031915	14	4.2	13	80	11	60	30	1	1	66	1.12
2031910--2031978	17	4.2	16	71	20	54	49	0	0	50	1.00
2031914--2031980	26	2.7	25	75	6	66	49	0	0	50	1.00
2035217--2035364	73	2.0	74	97	2	282	48	13	12	25	1.77
2036584--2036618	2	17.5	2	100	0	70	51	0	0	48	1.00
2037849--2037897	26	1.9	25	83	4	62	53	4	0	42	1.20
2038734--2038787	14	3.7	14	78	14	56	62	0	1	35	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2045135--2045177	9	4.8	9	85	8	52	72	2	0	25	0.97
2045919--2046008	44	2.0	44	91	0	144	38	10	1	50	1.43
2048275--2048313	2	19.5	2	100	0	78	0	48	0	51	1.00
2048697--2048742	17	2.9	17	79	20	55	43	0	4	52	1.21
2049054--2049094	18	2.2	19	86	8	57	56	2	0	41	1.13
2052101--2052154	23	2.5	21	82	11	56	44	0	0	55	0.99
2052459--2052483	9	2.8	9	100	0	50	80	0	0	20	0.72
2052768--2052813	15	2.8	16	80	12	58	65	2	0	32	1.05
2052741--2052791	13	3.8	14	77	12	54	60	1	0	37	1.08
2052744--2052826	18	4.6	18	70	15	55	62	2	0	34	1.08
2052763--2052826	17	3.9	17	72	13	53	65	1	0	32	1.02
2053490--2053532	16	2.8	15	79	6	50	60	0	0	39	0.97
2060293--2060329	19	1.9	19	89	10	58	40	0	0	59	0.97
2060293--2060341	16	2.9	17	82	14	57	40	0	0	59	0.98
2061054--2061091	12	3.4	11	83	16	51	31	0	0	68	0.90
2061046--2061091	24	2.0	23	86	4	65	34	0	0	65	0.93
2061052--2061088	13	3.0	13	88	11	60	32	0	0	67	0.91
2061684--2061737	25	2.2	25	83	6	65	44	5	1	48	1.37
2064060--2064092	3	11.0	3	100	0	66	66	0	0	33	0.92
2064197--2064260	30	2.1	31	82	2	76	51	3	0	45	1.17
2064866--2064900	2	17.5	2	100	0	70	48	0	0	51	1.00
2066732--2066772	21	1.9	22	85	5	57	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2069110--2069159	20	2.4	21	80	12	59	38	2	0	60	1.09
2069197--2069231	17	2.1	17	88	0	52	51	2	0	45	1.16
2069850--2069888	16	2.5	15	84	15	53	2	51	0	46	1.14
2070861--2070909	13	4.2	13	71	28	56	30	12	18	38	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15

The End!