genome.fa.s383.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold383
Parameters: 2 7 7 80 10 50 1000
Length:  1247277

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 583 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602159--602231	20	3.6	20	81	3	101	35	13	19	31	1.91
602177--602252	21	3.7	21	80	3	100	42	11	17	28	1.84
602159--602252	41	2.3	41	98	0	179	39	12	18	29	1.88
602291--602316	13	2.0	13	100	0	52	38	15	15	30	1.88
604082--604140	24	2.5	24	94	0	100	45	10	18	25	1.81
604310--604354	20	2.2	20	88	0	72	42	13	8	35	1.75
608184--608222	20	1.9	21	85	15	55	2	15	5	76	1.06
611005--611216	96	2.2	97	86	0	282	38	13	20	27	1.90
611181--611238	26	2.2	26	79	14	66	29	13	29	27	1.94
611181--611241	25	2.4	25	83	10	70	27	18	27	26	1.98
620616--620641	13	2.0	13	100	0	52	30	15	15	38	1.88
621349--621392	21	2.1	21	83	8	54	25	31	4	38	1.76
622715--622757	20	2.1	20	82	4	50	11	25	41	20	1.86
623198--623249	20	2.6	20	87	6	70	46	13	13	26	1.80
623430--623455	8	3.2	8	100	0	52	61	23	0	15	1.33
627144--627188	21	2.1	21	84	8	56	22	20	4	53	1.63
629402--629427	13	2.0	13	100	0	52	30	15	15	38	1.88
630290--630375	43	2.0	43	100	0	172	39	13	16	30	1.87
630802--630855	20	2.7	20	83	13	67	31	16	12	38	1.87
632191--632308	52	2.3	51	92	2	184	44	14	13	27	1.83
632670--632855	85	2.2	84	85	5	241	47	12	22	17	1.82
632999--633172	35	4.7	35	72	20	120	42	9	21	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632954--633119	80	2.1	80	84	6	221	42	12	21	23	1.87
633157--633245	46	1.9	46	95	0	160	46	14	19	20	1.84
633204--633431	81	2.8	80	80	5	264	44	12	21	21	1.85
635568--636096	111	4.8	112	83	4	643	37	12	12	36	1.82
635568--636096	224	2.4	219	83	6	635	37	12	12	36	1.82
638826--638878	20	2.6	21	84	6	72	35	9	20	33	1.85
638842--638879	20	1.9	20	100	0	76	36	10	21	31	1.87
638935--639072	52	2.7	52	86	1	188	30	14	13	42	1.84
643568--643612	16	2.6	17	80	19	58	77	6	11	4	1.09
643622--643646	12	2.1	12	100	0	50	68	16	16	0	1.22
647161--647280	52	2.3	52	95	0	213	28	17	19	35	1.94
647161--647300	52	2.7	52	86	4	185	29	17	20	33	1.95
647289--647313	13	1.9	13	100	0	50	36	16	16	32	1.90
647353--647422	33	2.1	33	89	0	104	40	14	11	34	1.82
647378--647402	13	1.9	13	100	0	50	32	16	16	36	1.90
648277--649037	49	15.7	49	86	5	996	29	17	27	25	1.98
649037--649108	33	2.2	33	87	2	110	20	16	36	26	1.94
649108--649339	34	6.9	34	88	4	319	33	12	33	21	1.90
649091--649434	67	5.2	67	82	8	334	32	13	32	22	1.92
649107--649434	101	3.3	100	82	8	370	33	13	31	21	1.92
649091--649432	34	10.3	33	84	7	279	32	13	32	22	1.92
649331--649494	62	2.6	61	86	6	215	28	17	29	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
649186--649497	93	3.3	92	82	8	297	30	15	31	23	1.95
649350--649494	31	4.7	31	87	7	197	26	18	28	25	1.98
650507--650544	17	2.2	17	90	0	58	0	7	5	86	0.69
652673--652866	59	3.2	59	80	7	171	23	30	16	29	1.96
652673--652895	29	7.4	30	77	9	181	23	30	16	29	1.96
652741--652987	88	2.8	87	81	6	250	24	31	15	28	1.95
652828--653014	59	3.3	58	81	7	179	25	33	13	27	1.93
652859--653028	57	3.0	56	81	10	202	24	32	13	29	1.93
653007--653535	28	17.6	32	72	13	162	31	29	16	22	1.96
653025--653195	63	2.7	64	82	3	186	30	30	15	23	1.96
652785--653455	29	22.9	28	77	11	325	28	31	16	24	1.96
653169--653455	86	3.3	86	81	9	275	31	30	17	20	1.96
653769--653963	63	3.1	63	86	4	288	23	24	13	38	1.90
654813--654850	20	1.9	20	88	0	58	39	13	18	28	1.88
655752--655778	13	2.1	13	100	0	54	29	14	14	40	1.86
655844--655896	13	4.5	13	71	26	55	32	11	16	39	1.85
655828--655896	33	2.1	33	89	5	104	30	11	18	39	1.87
662684--662740	19	2.9	19	84	2	69	29	15	17	36	1.91
662770--662822	20	2.7	20	88	5	72	32	15	18	33	1.92
669695--669734	20	2.0	21	95	5	73	5	17	0	77	0.94
673131--673161	6	5.2	6	100	0	62	83	0	16	0	0.64
673608--673654	20	2.3	20	81	0	58	34	12	14	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
673569--673704	71	1.9	70	86	1	191	32	16	13	38	1.87
674995--675030	16	2.2	16	90	0	54	86	5	8	0	0.72
676075--676424	67	5.3	67	85	9	390	21	36	13	29	1.91
676075--676458	33	11.6	33	77	14	334	20	35	13	29	1.91
676444--676589	33	4.4	33	87	6	206	29	33	19	17	1.95
676444--676605	66	2.5	66	89	6	233	29	34	19	17	1.94
676593--676868	43	6.1	43	84	8	336	25	26	18	30	1.98
676593--676868	92	3.1	92	92	3	438	25	26	18	30	1.98
676611--676921	135	2.2	138	88	5	457	24	25	18	31	1.98
676915--677377	169	2.7	169	92	2	743	21	26	14	37	1.92
677936--677960	13	1.9	13	100	0	50	36	16	16	32	1.90
677916--677985	33	2.1	33	89	0	104	34	11	14	40	1.82
678025--678049	13	1.9	13	100	0	50	32	16	16	36	1.90
678058--678182	52	2.4	52	95	0	223	36	18	17	28	1.94
687648--687673	13	2.0	13	100	0	52	38	15	15	30	1.88
691735--691765	15	2.1	15	93	0	53	48	16	22	12	1.80
693844--693869	13	2.0	13	100	0	52	30	15	15	38	1.88
693990--694035	21	2.2	20	81	11	58	32	19	4	43	1.71
696426--696451	13	2.0	13	100	0	52	38	15	15	30	1.88
697715--697765	22	2.3	22	89	0	75	29	25	13	31	1.94
697830--697866	10	3.6	10	89	7	56	40	18	5	35	1.74
697830--697873	21	2.1	21	86	0	61	38	18	11	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
698171--698223	28	1.9	27	81	11	63	32	5	9	52	1.57
698234--698285	27	1.9	27	88	7	79	40	3	5	50	1.45
701004--701165	78	2.1	78	94	2	281	33	12	11	42	1.79
701597--701636	3	13.3	3	100	0	80	67	0	0	32	0.91
703289--703333	17	2.6	16	89	10	63	82	0	15	2	0.77
703281--703332	8	5.7	9	78	17	54	80	0	15	3	0.85
703278--703336	12	4.8	12	78	17	68	81	0	15	3	0.82
709672--709867	59	3.3	59	82	4	216	26	11	14	47	1.79
709770--709974	107	1.9	107	81	4	243	26	12	14	47	1.79
709889--710024	59	2.3	58	82	6	166	26	11	13	47	1.78
710929--711040	32	3.5	32	68	13	86	44	19	16	19	1.87
711112--711196	32	2.7	32	75	0	80	41	18	16	23	1.90
711261--711313	27	2.0	27	85	7	72	39	11	28	20	1.87
715654--715682	12	2.5	12	94	5	51	37	13	17	31	1.89
716641--716676	16	2.2	16	90	0	54	58	11	16	13	1.63
720749--720787	19	2.1	19	95	0	69	25	7	25	41	1.82
721825--721850	13	2.0	13	100	0	52	30	15	15	38	1.88
722494--722619	63	2.0	63	100	0	252	28	33	3	34	1.73
722612--722655	21	2.1	21	83	8	54	25	31	4	38	1.76
726541--726571	15	2.1	15	93	0	53	12	22	16	48	1.80
730636--730661	13	2.0	13	100	0	52	30	15	15	38	1.88
732270--732316	21	2.2	21	92	0	76	23	19	0	57	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
734977--735511	157	3.4	157	80	3	497	38	22	17	22	1.93
737483--737642	57	2.8	57	81	0	194	5	21	19	53	1.66
739876--739979	54	1.9	55	86	5	149	50	16	17	16	1.79
740214--740672	84	5.5	83	68	8	284	43	14	25	17	1.86
740122--740898	168	4.7	167	83	4	836	43	13	25	17	1.86
741018--741216	85	2.3	85	77	1	211	30	17	30	22	1.96
741146--741240	43	2.2	43	82	0	118	31	18	25	24	1.98
741012--741360	128	2.7	126	78	8	337	35	15	28	20	1.94
741392--741534	42	3.4	42	77	5	155	34	19	27	18	1.96
741390--741628	84	2.8	83	80	6	207	33	18	29	17	1.94

Tables:   1   2   3   4   5