genome.fa.s383.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold383
Parameters: 2 7 7 80 10 50 1000
Length:  1247277

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 583 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1100154--1100237	13	5.5	13	71	28	60	35	17	13	33	1.89
1100162--1100258	19	5.8	18	72	27	97	37	17	12	32	1.87
1100154--1100256	32	3.2	32	98	0	197	35	18	12	33	1.89
1101060--1101955	61	15.3	56	85	8	959	26	20	26	26	1.99
1101170--1101955	61	13.3	61	89	5	1063	27	19	26	26	1.99
1101061--1101955	116	7.7	117	86	7	1098	26	20	26	26	1.99
1101248--1101336	29	3.2	29	64	20	80	22	19	30	28	1.98
1101640--1101722	27	3.0	27	60	16	62	21	19	30	28	1.98
1102981--1103078	51	1.9	51	89	0	151	37	10	22	29	1.87
1102983--1103097	51	2.3	51	83	3	133	37	12	21	28	1.90
1103111--1103363	79	3.2	79	86	3	330	32	13	25	28	1.94
1103034--1103232	107	1.9	107	86	4	285	32	13	25	28	1.93
1105747--1105797	20	2.5	20	96	0	93	37	9	15	37	1.81
1105817--1105873	20	2.8	20	82	10	62	40	17	17	24	1.91
1105889--1105918	13	2.3	13	88	0	51	40	13	13	33	1.83
1106533--1106632	40	2.4	41	85	6	123	44	12	27	17	1.83
1106667--1106832	42	3.9	42	76	4	152	39	12	26	21	1.89
1106812--1107048	61	3.9	61	80	6	246	29	20	25	24	1.99
1106993--1107236	93	2.6	94	88	4	350	27	18	28	25	1.98
1107187--1107350	55	2.8	58	82	11	203	26	19	28	26	1.99
1107269--1107377	54	2.0	54	90	1	173	22	22	29	26	1.99
1107098--1107581	209	2.3	210	88	3	701	26	19	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1107238--1107373	55	2.5	54	83	8	179	25	21	27	26	1.99
1106934--1107522	154	3.8	152	71	14	415	26	19	28	25	1.99
1107393--1107648	55	4.4	57	80	8	261	26	19	25	28	1.99
1108628--1108719	1	92.0	1	69	0	58	2	2	10	84	0.79
1108629--1108716	8	10.9	8	77	9	72	2	2	11	84	0.81
1108629--1108719	27	3.4	25	82	13	110	2	2	10	84	0.80
1108628--1108716	19	4.9	18	83	8	101	2	2	11	84	0.81
1110291--1110316	13	2.0	13	100	0	52	30	15	15	38	1.88
1110355--1110430	21	3.7	21	80	3	100	28	17	11	42	1.84
1110376--1110448	20	3.6	20	81	3	101	31	19	13	35	1.91
1110355--1110448	41	2.3	41	98	0	179	29	18	12	39	1.88
1110949--1111200	126	2.0	126	100	0	504	29	21	6	42	1.77
1111156--1111255	50	2.0	50	100	0	200	24	32	4	40	1.73
1113064--1113102	13	3.0	13	96	0	69	35	15	17	30	1.91
1113088--1113166	20	3.7	20	70	20	70	45	16	12	25	1.82
1115174--1115211	15	2.5	15	91	0	58	13	21	15	50	1.78
1117226--1117268	22	2.0	22	86	4	61	18	11	13	55	1.68
1119276--1119301	13	2.0	13	100	0	52	30	15	15	38	1.88
1119340--1119415	21	3.7	21	76	3	91	28	18	10	42	1.83
1119361--1119433	20	3.6	20	77	3	92	31	20	12	35	1.90
1119343--1119433	41	2.2	41	96	0	164	29	19	10	39	1.86
1127662--1127686	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1127747--1127773	13	2.1	13	100	0	54	40	14	14	29	1.86
1127729--1127793	33	2.0	33	93	3	114	38	16	12	32	1.86
1134575--1134645	28	2.5	28	84	11	101	26	19	29	23	1.98
1134631--1134747	51	2.3	50	80	4	144	32	11	24	30	1.92
1134690--1134978	79	3.7	79	84	1	377	33	13	24	28	1.93
1134917--1135031	51	2.3	49	82	8	135	32	12	28	26	1.92
1137325--1137439	20	5.8	20	88	6	171	43	14	15	26	1.85
1143180--1143406	85	2.6	84	82	5	249	34	14	31	19	1.91
1143528--1144114	87	6.7	87	81	4	607	40	15	22	20	1.90
1143528--1144071	131	4.2	129	77	8	503	41	15	22	20	1.90
1162438--1162758	165	1.9	165	80	8	377	51	8	10	29	1.65
1172943--1173046	21	5.0	21	70	8	77	35	19	11	33	1.88
1173084--1173133	21	2.4	21	86	0	64	50	8	6	36	1.57
1173699--1173925	119	1.9	119	82	5	289	40	14	16	29	1.87
1175263--1175323	32	1.9	33	86	6	90	45	11	9	32	1.73
1179620--1179699	7	13.0	6	73	19	51	18	8	0	72	1.10
1179659--1179699	12	3.2	13	77	16	50	14	9	0	75	1.04
1179632--1179679	18	2.6	17	84	12	60	20	8	0	70	1.12
1179775--1179824	15	3.3	15	86	8	66	78	0	0	22	0.76
1179775--1179832	7	7.8	8	78	17	63	77	0	0	22	0.77
1182522--1182566	23	2.0	23	86	0	63	26	2	8	62	1.37
1182527--1182566	8	5.1	8	84	6	55	22	2	10	65	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1183109--1183142	16	2.1	16	94	0	59	47	20	11	20	1.81
1184225--1184297	20	3.6	20	81	3	101	35	13	17	32	1.89
1184242--1184318	21	3.8	20	77	8	84	41	11	16	29	1.84
1184225--1184318	41	2.3	40	92	7	154	38	12	18	30	1.88
1184357--1184382	13	2.0	13	100	0	52	38	15	15	30	1.88
1188443--1188473	15	2.1	15	93	0	53	48	16	22	12	1.80
1190552--1190590	13	3.0	13	96	0	69	30	17	15	35	1.91
1192431--1192526	48	2.0	48	100	0	192	37	8	29	25	1.85
1193078--1193150	20	3.6	20	81	3	101	35	13	17	32	1.89
1193095--1193171	21	3.8	20	77	8	84	41	11	16	29	1.84
1193078--1193171	41	2.3	40	92	7	154	38	12	18	30	1.88
1193210--1193235	13	2.0	13	100	0	52	38	15	15	30	1.88
1195095--1195214	58	2.1	58	98	0	231	40	11	8	39	1.72
1196059--1196105	8	5.6	8	83	16	60	80	0	14	4	0.85
1196059--1196105	24	1.9	24	91	4	76	80	0	14	4	0.85
1196058--1196110	24	2.2	24	83	6	72	77	0	18	3	0.92
1196974--1197103	30	4.4	29	72	18	83	30	8	12	49	1.70
1197095--1197331	117	2.0	114	79	10	259	30	13	11	44	1.79
1197129--1197309	58	3.1	59	79	8	194	29	12	12	45	1.79
1197131--1197353	115	1.9	117	83	8	287	29	13	13	44	1.80
1197129--1197488	59	6.2	58	73	11	220	29	12	12	45	1.78
1202192--1202249	10	5.6	10	80	8	53	68	3	0	27	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1202187--1202248	31	2.0	32	87	9	92	66	3	0	30	1.08
1202198--1202248	10	4.9	10	85	7	66	68	1	0	29	1.00
1202198--1202249	21	2.5	20	78	9	68	69	1	0	28	0.99
1207818--1207848	16	1.9	16	93	0	53	54	0	9	35	1.33
1211856--1211920	33	2.0	33	84	6	87	38	12	13	35	1.83
1218750--1218791	20	2.1	20	91	8	68	38	14	2	45	1.58
1225336--1225361	13	2.0	13	100	0	52	30	15	15	38	1.88
1225316--1225379	32	2.0	33	90	3	103	28	14	15	42	1.86
1227436--1227478	20	2.1	20	82	4	50	9	27	44	18	1.80
1227910--1227960	13	3.9	13	97	0	93	33	15	19	31	1.93
1234133--1234158	13	2.0	13	100	0	52	30	15	15	38	1.88
1234113--1234176	32	2.0	33	90	3	103	28	14	15	42	1.86
1237523--1237689	88	1.9	88	91	0	271	38	8	20	31	1.83
1243251--1243298	14	3.4	14	82	8	62	43	0	0	56	0.99
1243326--1243360	17	2.0	18	88	5	54	60	0	2	37	1.12

Tables:   1   2   3   4   5

The End!