genome.fa.s383.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold383
Parameters: 2 7 7 80 10 50 1000
Length:  1247277

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 583 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
928724--928771	20	2.4	20	92	0	78	56	2	18	22	1.52
930895--930955	15	4.3	14	76	23	65	54	1	1	42	1.20
931104--931140	17	2.1	18	90	5	58	16	24	10	48	1.77
932258--932287	2	15.0	2	100	0	60	50	0	0	50	1.00
933467--933515	22	2.3	21	80	13	55	77	0	20	2	0.87
934828--934897	27	2.5	28	86	6	106	42	11	0	45	1.40
934675--935083	211	1.9	211	100	0	818	40	7	9	43	1.64
935050--935122	38	1.9	37	83	8	94	43	9	0	46	1.36
936894--936923	13	2.3	13	94	0	51	36	10	16	36	1.82
936968--937023	19	2.9	19	83	2	76	37	12	17	32	1.88
936969--937040	20	3.7	19	80	14	76	38	11	16	33	1.84
938449--938474	13	2.0	13	100	0	52	30	15	15	38	1.88
938428--938492	32	2.0	33	93	6	114	27	12	15	44	1.82
938428--938492	19	3.6	19	73	26	70	27	12	15	44	1.82
939379--939422	23	2.0	21	86	8	61	59	18	9	13	1.60
940559--940601	20	2.1	21	86	4	61	9	23	44	23	1.82
941032--941056	13	1.9	13	100	0	50	32	16	20	32	1.94
944973--945017	21	2.1	21	84	8	56	22	20	4	53	1.63
946884--946942	32	1.9	30	83	13	75	59	10	10	20	1.58
947223--947248	13	2.0	13	100	0	52	30	15	15	38	1.88
947202--947266	32	2.0	33	93	6	114	27	12	15	44	1.82
947202--947266	19	3.6	19	73	26	70	27	12	15	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
949506--949530	13	1.9	13	100	0	50	36	16	16	32	1.90
950723--950752	13	2.3	13	94	0	51	36	10	20	33	1.86
950797--950868	20	3.7	20	81	7	69	38	13	15	31	1.87
952096--952279	78	2.4	78	79	6	203	28	11	20	39	1.87
953347--953398	19	2.7	20	84	6	70	40	17	11	30	1.85
953432--953475	20	2.1	22	91	8	74	40	20	9	29	1.83
958200--958225	13	2.0	13	100	0	52	38	15	15	30	1.88
964410--964448	13	3.0	13	84	0	51	33	15	15	35	1.89
966222--966274	26	2.0	26	96	0	97	43	0	32	24	1.55
966915--966939	13	1.9	13	100	0	50	32	16	16	36	1.90
966892--966957	33	2.0	33	93	0	114	28	16	18	36	1.93
974422--974460	18	2.2	18	85	0	51	61	0	20	17	1.34
976477--976549	20	3.7	20	77	14	80	26	9	12	52	1.69
978645--978675	13	2.4	13	94	0	53	35	16	12	35	1.87
984829--984937	33	3.3	33	97	0	200	35	15	9	39	1.79
984862--984924	20	3.5	20	68	28	68	36	14	9	39	1.78
984911--984945	13	2.7	13	81	0	52	31	17	14	37	1.89
985063--985110	22	2.3	20	82	13	53	33	20	0	45	1.52
985377--985415	20	1.9	21	84	5	53	15	38	28	17	1.91
987468--987531	13	5.4	13	71	21	59	35	12	15	35	1.85
987452--987535	33	2.5	33	86	3	116	33	11	19	35	1.88
993130--993213	41	2.0	41	97	0	159	40	9	20	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
993903--993985	23	3.7	23	76	14	75	39	0	0	60	0.97
993941--993984	18	2.4	19	77	7	56	36	0	0	63	0.95
994876--994933	27	2.2	25	79	8	62	53	0	1	44	1.10
994884--994935	26	2.0	27	88	3	79	53	0	0	46	1.00
996583--996675	48	1.9	49	88	2	143	41	12	7	37	1.72
1003631--1003768	70	2.0	71	92	1	233	28	15	12	43	1.83
1003642--1003869	20	11.4	19	67	21	94	28	14	13	42	1.84
1003642--1003876	90	2.6	91	88	3	343	28	15	12	42	1.84
1003803--1003869	20	3.3	20	85	0	98	31	14	13	40	1.85
1003803--1003897	40	2.4	39	86	10	124	30	16	12	40	1.86
1003716--1003945	109	2.1	109	84	5	295	28	15	13	43	1.84
1003903--1003942	20	1.9	22	90	10	66	27	12	12	47	1.77
1017844--1017879	16	2.3	15	86	9	54	86	11	2	0	0.68
1019040--1019064	13	1.9	13	100	0	50	32	16	16	36	1.90
1019153--1019201	13	4.2	13	70	24	54	32	16	16	34	1.91
1019133--1019201	34	2.1	32	89	10	104	34	15	15	33	1.90
1021603--1021702	50	2.0	50	100	0	200	30	18	12	40	1.86
1027266--1027313	24	2.1	23	88	7	71	31	0	33	35	1.58
1028494--1029004	28	17.7	28	77	10	329	29	30	16	23	1.96
1028500--1029004	56	8.7	56	76	8	415	30	30	16	23	1.96
1028500--1029004	84	5.8	84	79	7	395	30	30	16	23	1.96
1029119--1029279	48	3.4	46	82	4	144	21	24	18	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1029153--1029281	48	2.7	48	88	0	186	20	25	17	35	1.95
1029991--1030061	20	3.5	20	77	7	81	35	16	11	36	1.85
1035163--1035188	13	2.0	13	100	0	52	38	15	15	30	1.88
1035275--1035301	13	2.1	13	100	0	54	40	14	14	29	1.86
1035863--1035916	18	3.1	18	67	5	56	29	24	3	42	1.72
1035838--1035916	35	2.2	37	93	4	135	29	27	2	40	1.69
1046099--1046227	52	2.5	52	97	0	240	28	17	17	36	1.93
1046236--1046261	13	2.0	13	100	0	52	38	15	15	30	1.88
1046963--1047109	43	3.0	51	76	16	184	34	17	23	25	1.96
1047144--1047372	49	4.6	53	77	12	186	33	17	23	25	1.96
1046845--1047327	218	2.2	218	95	0	849	34	16	24	24	1.95
1047181--1047418	43	5.0	47	77	14	233	32	17	23	25	1.97
1047181--1047417	92	2.5	93	90	4	352	32	17	24	25	1.97
1047480--1047767	59	4.8	59	87	2	398	21	17	31	30	1.96
1047480--1047767	30	9.7	30	86	3	386	21	17	31	30	1.96
1047460--1047771	90	3.5	90	87	3	429	21	16	30	31	1.95
1049198--1049263	7	9.7	7	73	16	50	0	4	12	83	0.79
1049207--1049266	13	4.5	13	77	6	59	0	5	10	85	0.75
1049198--1049264	8	8.6	8	75	17	52	0	4	11	83	0.78
1049198--1049299	47	2.2	45	79	10	109	1	7	9	80	0.98
1063210--1063234	13	1.9	13	100	0	50	36	16	16	32	1.90
1063295--1063321	13	2.1	13	100	0	54	40	14	14	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1063277--1063341	33	2.0	33	93	3	114	38	16	12	32	1.86
1064484--1064550	33	2.0	33	91	5	109	34	16	11	37	1.85
1064504--1064529	13	2.0	13	100	0	52	38	15	15	30	1.88
1064579--1064639	21	3.0	21	77	15	74	34	16	13	36	1.87
1064620--1064646	13	2.1	13	100	0	54	40	14	14	29	1.86
1065631--1065920	162	1.8	160	85	3	411	42	11	11	35	1.76
1068820--1068857	19	2.0	19	94	0	67	13	26	34	26	1.93
1068923--1069043	51	2.3	53	85	7	158	33	11	24	30	1.91
1071408--1071433	13	2.0	13	100	0	52	38	15	15	30	1.88
1071387--1071453	33	2.0	33	88	0	98	43	16	14	25	1.86
1071473--1071572	19	5.9	18	73	26	103	38	15	12	35	1.84
1071495--1071551	13	3.9	13	76	24	60	35	15	14	35	1.88
1071476--1071570	32	3.0	32	98	0	181	36	15	12	34	1.86
1071628--1071684	21	2.7	21	97	0	105	36	19	10	33	1.86
1072864--1072961	33	3.0	33	89	5	146	32	17	15	34	1.91
1072863--1072962	20	5.7	19	68	29	64	34	17	15	34	1.90
1072917--1072941	13	1.9	13	100	0	50	32	16	16	36	1.90
1075486--1075524	13	3.1	13	81	3	53	38	15	12	33	1.85
1078484--1078633	48	3.1	48	96	0	273	32	10	18	40	1.83
1079816--1079890	28	2.7	28	85	0	87	22	18	34	24	1.96
1082341--1082397	21	2.8	21	91	2	89	45	12	17	24	1.83
1082429--1082489	19	3.5	19	70	25	62	39	16	11	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1082421--1082487	32	2.2	30	84	10	84	37	17	11	32	1.87
1082444--1082468	13	1.9	13	100	0	50	32	16	16	36	1.90
1083382--1084168	61	13.3	61	87	5	1045	27	19	26	26	1.99
1083272--1084168	122	7.7	118	87	7	1099	26	20	26	26	1.99
1083276--1084168	470	1.9	465	87	6	1318	26	19	26	26	1.99
1097457--1097555	51	1.9	51	84	10	130	35	12	24	28	1.91
1097538--1097614	28	2.8	28	85	0	91	22	19	35	23	1.96
1097598--1097719	51	2.4	52	80	14	137	30	11	27	31	1.91
1100085--1100110	13	2.0	13	100	0	52	38	15	15	30	1.88
1100064--1100130	34	2.0	33	91	2	107	44	13	16	25	1.84

Tables:   1   2   3   4   5