genome.fa.s415.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold415
Parameters: 2 7 7 80 10 50 1000
Length:  1242643

Tables:   1   2   3   4   5   6   7   8   

This is table  6  of  8  ( 880 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
864034--864084	18	3.0	17	86	13	70	70	0	0	29	0.87
864157--864192	16	2.4	15	86	13	56	58	2	5	33	1.36
865196--865221	13	2.0	13	100	0	52	38	15	15	30	1.88
865174--865241	33	2.1	33	88	2	102	32	11	19	36	1.88
865322--865346	13	1.9	13	100	0	50	36	16	16	32	1.90
866688--866723	17	2.1	17	100	0	72	47	5	5	41	1.50
868937--868985	25	2.0	25	91	0	80	26	14	26	32	1.94
876750--876843	18	5.2	18	70	19	63	1	26	0	72	0.92
876809--876849	16	2.5	17	85	14	59	0	24	0	75	0.80
876991--877028	20	1.9	20	88	0	58	18	7	7	65	1.43
883382--884178	78	10.2	78	80	3	886	28	22	24	24	2.00
883387--884148	156	4.9	156	91	0	1184	28	22	24	24	2.00
885713--885748	9	3.6	10	88	11	56	66	0	0	33	0.92
885730--885786	22	2.4	23	82	8	62	52	3	1	42	1.28
885969--886019	22	2.3	22	83	12	61	39	1	0	58	1.09
886275--886320	18	2.8	17	84	12	60	32	0	0	67	0.91
886281--886319	18	2.3	17	91	8	62	25	0	0	74	0.82
887019--887049	16	1.9	16	93	0	53	35	0	9	54	1.33
887047--887090	15	2.9	16	86	6	65	52	0	0	47	1.00
887049--887090	8	5.5	8	81	18	54	52	0	0	47	1.00
888836--888870	3	11.7	3	100	0	70	65	0	0	34	0.93
888926--888968	20	2.2	20	84	8	63	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
888927--888977	16	3.1	16	80	11	50	39	0	0	60	0.97
889273--889321	2	24.5	2	100	0	98	48	0	0	51	1.00
889362--889390	14	2.1	14	93	6	51	82	0	10	6	0.83
890087--890120	16	2.1	17	88	5	52	35	2	0	61	1.11
892819--892885	9	7.7	9	78	9	68	47	0	1	50	1.10
896662--896739	20	3.9	19	80	8	93	42	11	12	33	1.79
902475--902546	19	3.7	19	87	5	99	33	16	12	37	1.86
902871--902941	21	3.4	20	74	14	72	32	16	28	22	1.96
905496--905551	24	2.3	24	93	0	94	26	14	37	21	1.92
905949--906074	43	2.9	43	86	2	164	18	18	23	40	1.91
914170--914196	2	13.5	2	100	0	54	51	0	0	48	1.00
918739--918779	15	2.5	17	76	7	50	46	0	4	48	1.23
922508--922579	23	3.2	23	72	14	62	47	8	1	43	1.42
922722--922784	31	2.0	31	96	0	117	44	7	15	31	1.76
923246--923298	20	2.6	20	88	8	72	47	1	1	49	1.23
923246--923298	21	2.6	21	85	8	65	47	1	1	49	1.23
927500--927535	18	2.0	18	89	10	56	61	0	0	38	0.96
929867--929956	28	3.4	27	77	8	78	26	6	21	45	1.76
930990--931027	19	2.0	19	94	0	67	39	0	2	57	1.12
931481--931537	28	2.0	28	86	0	78	54	0	0	45	0.99
931798--931846	20	2.4	20	80	12	55	59	14	6	20	1.56
935405--935431	13	2.1	13	100	0	54	29	29	11	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
936027--936068	21	2.0	21	90	9	68	40	0	0	59	0.97
940678--940711	2	17.5	2	93	6	61	50	0	0	50	1.00
941669--941703	17	2.0	17	88	5	52	68	0	0	31	0.90
952112--952170	21	2.8	21	82	7	57	22	0	3	74	0.96
952855--952895	22	1.9	21	85	14	57	39	2	0	58	1.11
953401--953496	27	3.7	27	79	4	90	26	10	17	45	1.80
953436--953496	24	2.4	25	81	8	70	29	8	16	45	1.76
953557--953592	13	2.8	13	86	0	54	19	44	8	27	1.79
955726--955767	21	2.0	21	95	0	75	45	9	16	28	1.79
958144--958529	52	7.4	53	70	13	199	30	26	11	32	1.91
958311--958529	51	4.3	51	80	5	199	31	26	10	31	1.90
958145--958634	262	1.9	262	91	1	804	29	26	12	32	1.92
958540--958776	79	3.0	78	79	5	262	27	26	14	32	1.94
967959--968005	21	2.2	21	96	0	85	27	27	25	19	1.99
971171--971246	1	76.0	1	76	0	71	88	10	1	0	0.58
971171--971246	10	7.8	10	80	14	88	88	10	1	0	0.58
971173--971235	18	3.4	18	91	4	99	87	12	0	0	0.55
971171--971246	39	2.0	39	89	7	120	88	10	1	0	0.58
971172--971243	19	3.8	18	82	17	92	87	11	1	0	0.61
972214--972398	100	1.9	100	86	2	264	25	27	17	29	1.98
972312--972791	116	4.2	116	85	4	620	27	28	19	24	1.99
972343--972791	55	8.0	55	81	9	512	27	28	19	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
972347--972783	170	2.6	167	82	10	519	27	28	19	24	1.99
973566--973627	19	3.2	19	70	20	56	41	16	14	27	1.87
973615--973639	13	1.9	13	100	0	50	36	16	16	32	1.90
973598--973666	32	2.2	32	91	0	111	31	14	18	34	1.91
973690--973715	13	2.0	13	100	0	52	30	15	15	38	1.88
976077--976565	52	9.4	52	75	8	404	29	26	11	32	1.91
976243--976565	51	6.3	51	85	2	387	29	24	11	34	1.90
976288--976565	103	2.7	103	93	1	459	30	24	10	34	1.89
976546--976599	28	2.0	27	88	0	72	25	29	16	27	1.97
976576--976812	79	3.0	78	76	5	251	25	25	15	33	1.95
982148--982268	52	2.3	52	97	0	224	28	18	18	34	1.94
982148--982288	52	2.7	51	90	4	212	30	17	18	33	1.94
982277--982301	13	1.9	13	100	0	50	36	16	16	32	1.90
982340--982409	33	2.1	33	89	0	104	40	14	11	34	1.82
982365--982389	13	1.9	13	100	0	50	32	16	16	36	1.90
983198--983324	67	1.9	68	85	1	175	37	13	25	24	1.92
983328--984176	49	17.9	49	83	9	1104	31	18	24	24	1.97
983485--984176	92	7.5	92	98	1	1294	31	18	25	24	1.98
984176--984314	34	4.2	34	85	10	209	20	17	34	27	1.95
984169--984314	65	2.2	65	88	9	226	19	17	34	28	1.94
984296--985054	34	22.3	34	87	8	939	32	12	35	20	1.89
984296--985056	69	11.2	68	88	5	971	32	12	35	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
984984--985147	31	5.3	31	88	6	235	26	17	30	25	1.97
986077--986106	11	2.7	11	94	0	51	0	3	3	93	0.42
986077--986110	14	2.5	14	90	4	52	0	2	5	91	0.51
986347--986414	12	5.6	12	81	8	66	0	1	14	83	0.71
986347--986403	11	4.9	12	82	10	66	0	1	14	84	0.71
986347--986415	13	5.5	13	80	15	74	0	1	14	84	0.70
986347--986420	32	2.3	33	90	2	114	0	1	13	85	0.67
986359--986420	1	62.0	1	73	0	52	0	0	12	87	0.55
993285--993405	52	2.3	52	97	0	224	28	18	18	34	1.94
993285--993425	52	2.7	51	90	4	212	30	17	18	33	1.94
993414--993438	13	1.9	13	100	0	50	36	16	16	32	1.90
993477--993546	33	2.1	33	89	0	104	40	14	11	34	1.82
993502--993526	13	1.9	13	100	0	50	32	16	16	36	1.90
994335--994461	67	1.9	68	85	1	175	37	13	25	24	1.92
994465--995313	49	17.9	49	83	9	1104	31	18	24	24	1.97
994622--995313	92	7.5	92	98	1	1294	31	18	25	24	1.98
995313--995451	34	4.2	34	85	10	200	20	17	33	27	1.96
995306--995451	65	2.2	65	87	9	217	19	17	34	28	1.95
996406--996497	27	3.5	26	77	10	80	26	8	19	45	1.79
996530--996578	13	3.8	13	86	0	71	20	42	6	30	1.76
996530--996590	26	2.4	25	81	10	70	18	40	6	34	1.76
997404--997433	2	15.0	2	92	0	51	50	0	3	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
999136--999169	16	2.1	16	88	0	50	58	0	2	38	1.13
1001916--1001979	27	2.5	26	82	9	78	28	6	23	42	1.78
1002042--1002075	13	2.6	13	85	0	50	17	44	5	32	1.73
1006421--1006484	27	2.5	26	85	9	87	25	7	25	42	1.81
1006547--1006580	13	2.6	13	95	0	59	17	47	5	29	1.71
1007278--1007365	27	3.3	27	70	12	81	52	2	12	32	1.52
1007282--1007368	26	3.3	26	72	12	77	51	3	12	32	1.56
1007272--1007380	54	2.0	54	89	0	164	48	3	11	35	1.58
1007652--1007740	35	2.5	36	76	20	89	53	2	3	40	1.30
1007718--1007750	17	2.0	16	94	5	57	72	0	0	27	0.85

Tables:   1   2   3   4   5   6   7   8