Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold415
Parameters: 2 7 7 80 10 50 1000
Length:  1242643

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 880 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1197883--1197926
2
22.5
2
90
4
72
45
0
0
54
0.99
1201050--1201094
17
2.9
15
84
12
63
48
0
4
46
1.22
1201393--1201445
18
3.1
17
76
15
56
33
0
0
66
0.92
1201397--1201431
15
2.2
16
90
5
54
28
0
0
71
0.86
1201396--1201434
16
2.4
17
83
12
55
28
0
0
71
0.86
1201573--1201606
7
5.1
7
86
13
54
14
0
0
85
0.60
1201573--1201597
12
2.1
12
100
0
50
16
0
0
84
0.63
1201733--1201788
20
2.7
22
78
13
73
30
0
0
69
0.89
1203383--1203431
3
16.3
3
100
0
98
32
0
0
67
0.91
1203641--1203674
3
11.7
3
87
6
52
64
0
0
35
0.94
1204008--1204052
21
2.1
21
84
8
56
42
0
0
57
0.98
1204696--1204732
16
2.5
14
91
8
56
54
0
0
45
1.00
1205242--1205290
22
2.2
24
82
10
59
32
6
0
61
1.21
1211950--1212047
27
3.6
28
94
2
164
41
1
0
57
1.05
1211953--1212066
27
4.1
27
86
7
88
41
2
0
56
1.13
1213497--1213545
20
2.5
19
83
3
62
2
34
0
63
1.06
1214265--1214301
16
2.2
17
90
4
58
43
13
0
43
1.44
1214414--1214464
22
2.1
26
82
13
65
37
7
1
52
1.42
1214437--1214507
16
4.4
16
82
8
63
40
8
1
49
1.42
1218387--1218417
13
2.4
13
94
0
53
61
0
0
38
0.96
1218492--1218519
7
4.0
7
100
0
56
42
0
0
57
0.99
1220898--1220940
22
1.9
23
85
4
61
60
2
2
34
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1225026--1225058
11
3.0
11
95
0
57
18
9
15
57
1.63
1226768--1226833
21
2.9
23
78
13
66
51
1
3
43
1.26
1227041--1227076
2
18.0
2
100
0
72
50
0
0
50
1.00
1227554--1227580
2
13.5
2
100
0
54
51
0
0
48
1.00
1227683--1227716
17
2.1
17
88
5
52
41
14
2
41
1.61
1227920--1227947
2
14.0
2
100
0
56
50
0
0
50
1.00
1231097--1231121
2
12.5
2
100
0
50
52
0
0
48
1.00
1231180--1231215
18
2.0
18
100
0
72
27
5
5
61
1.41
1234629--1234663
18
1.9
18
88
0
52
20
8
5
65
1.40
1236616--1236649
15
2.3
15
89
0
50
17
2
0
79
0.86
1237662--1237710
23
2.1
23
84
0
62
53
0
0
46
1.00
1238537--1238580
22
2.0
22
81
4
52
52
2
2
43
1.26
1238308--1238618
152
2.0
154
91
4
522
44
6
7
42
1.58
1239151--1239197
10
4.7
10
86
0
58
48
8
0
42
1.33
1239151--1239197
4
11.8
4
86
0
58
48
8
0
42
1.33
1239151--1239197
6
7.8
6
85
0
58
48
8
0
42
1.33
1239733--1239763
15
2.0
16
93
6
55
19
22
0
58
1.40
1241395--1241444
2
24.5
2
81
18
59
46
2
4
48
1.32

Tables:   1   2   3   4   5   6   7   8

The End!