genome.fa.s417.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold417
Parameters: 2 7 7 80 10 50 1000
Length:  511691

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 614 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95967--96011	13	3.5	13	76	11	56	44	2	6	46	1.42
95958--96011	26	2.1	26	92	0	90	44	5	9	40	1.60
96933--96982	24	2.1	24	81	7	57	44	4	10	42	1.56
97136--97190	25	2.2	25	90	6	85	45	7	5	41	1.55
97943--97969	14	1.9	14	100	0	54	92	0	7	0	0.38
98098--98152	5	11.0	5	78	7	58	58	1	3	36	1.26
98103--98152	20	2.5	19	87	6	64	60	2	4	34	1.27
98534--98566	3	10.7	3	93	6	57	33	0	0	66	0.92
108003--108035	2	16.5	2	100	0	66	0	51	0	48	1.00
109872--110074	102	2.0	102	90	1	318	41	17	8	32	1.79
112219--112810	241	2.5	238	81	4	661	34	16	21	27	1.94
115614--115649	16	2.2	17	90	5	56	44	0	0	55	0.99
116186--116243	21	2.7	22	72	17	59	46	0	0	53	1.00
116912--116974	21	3.0	21	83	9	83	60	1	0	38	1.07
117737--117776	16	2.4	16	87	4	53	57	0	2	40	1.12
119105--119156	28	1.9	27	84	7	70	34	0	1	63	1.06
119272--119306	10	3.6	10	84	7	54	62	0	0	37	0.95
119742--119782	19	2.2	18	86	4	55	48	0	0	51	1.00
120863--120895	15	2.2	15	89	10	50	54	0	3	42	1.15
121339--121399	32	1.9	31	90	9	97	59	0	0	40	0.98
121364--121412	20	2.3	22	79	6	57	59	0	2	38	1.09
121739--121873	8	15.6	9	72	20	76	40	0	0	59	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121726--121873	50	2.8	51	77	14	151	41	0	0	58	1.03
121739--121841	32	3.2	32	82	12	113	40	0	0	58	1.05
121767--121875	18	6.1	18	70	17	75	38	0	0	60	1.03
121748--121883	27	5.2	27	71	20	103	38	0	0	60	1.02
121753--121884	10	13.8	10	68	18	52	39	0	0	59	1.03
122138--122188	4	12.2	4	80	15	59	27	0	0	72	0.85
122139--122211	20	3.8	20	82	12	82	30	0	2	67	1.05
122138--122197	21	2.9	21	80	14	70	30	0	0	70	0.88
122256--122283	14	2.0	14	100	0	56	64	0	0	35	0.94
122496--122522	14	1.9	14	100	0	54	51	0	11	37	1.37
122560--122647	28	3.1	27	78	12	88	52	2	0	45	1.13
122591--122649	24	2.5	24	71	13	59	54	0	0	45	0.99
122918--122982	34	2.0	32	82	11	78	60	0	0	40	0.97
123179--123221	21	2.1	20	83	12	52	44	0	0	55	0.99
123271--123320	25	2.0	24	88	11	75	50	4	0	46	1.20
123295--123335	17	2.4	18	80	19	52	53	2	2	41	1.27
123620--123665	21	2.2	21	84	0	56	47	0	2	50	1.13
123628--123690	27	2.4	26	82	10	67	50	0	4	44	1.23
123749--123815	31	2.2	31	84	7	84	43	0	0	56	0.99
123750--123812	20	3.2	19	74	14	56	42	0	0	57	0.99
124083--124147	8	7.4	9	71	25	50	43	0	0	56	0.99
124068--124155	27	3.3	26	82	9	90	38	0	2	59	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125091--125130	4	10.0	4	100	0	80	75	0	0	25	0.81
125403--125540	35	3.7	35	76	13	105	56	0	2	39	1.19
125557--125590	16	2.2	16	89	5	52	50	2	0	47	1.16
126759--126804	21	2.1	23	84	8	60	39	0	0	60	0.97
126765--126876	50	2.3	47	80	14	122	43	0	0	55	1.05
126975--127034	18	3.5	18	74	21	65	50	0	0	50	1.00
126986--127051	19	3.8	18	76	19	68	43	0	0	56	0.99
130270--130323	9	6.2	8	82	8	54	68	1	0	29	1.00
130270--130323	17	3.1	17	76	12	56	68	1	0	29	1.00
130378--130421	20	2.2	20	83	4	52	52	4	2	40	1.34
131099--131140	22	1.9	22	85	9	59	54	4	0	40	1.21
131372--131448	14	5.9	14	68	23	51	41	1	1	55	1.16
131679--131703	2	12.5	2	100	0	50	52	0	0	48	1.00
131716--131796	29	2.9	27	82	10	83	27	1	3	67	1.14
131729--131796	29	2.3	29	85	9	86	27	1	2	67	1.13
131825--131918	30	3.1	30	82	0	116	50	0	4	45	1.21
132116--132189	26	2.8	26	81	2	85	44	1	0	54	1.08
132131--132199	26	2.5	28	79	11	72	43	0	1	55	1.08
141197--141226	15	2.0	15	93	0	51	26	0	36	36	1.57
142594--142623	16	1.9	15	93	6	51	36	33	13	16	1.88
145795--146055	128	2.0	128	97	0	495	41	22	16	18	1.90
146365--146391	14	1.9	14	100	0	54	37	29	18	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146248--146491	124	2.0	124	100	0	488	36	22	24	17	1.95
148053--148086	14	2.4	14	85	0	50	76	0	0	23	0.79
148288--148375	37	2.4	37	96	0	158	35	5	6	52	1.52
148756--148820	29	2.1	33	88	11	102	58	0	0	41	0.98
148759--148835	36	2.1	36	81	9	86	61	0	0	38	0.96
148783--148835	18	2.9	18	74	2	52	60	0	0	39	0.97
149049--149088	3	13.7	3	84	5	55	37	2	0	60	1.11
149607--149638	15	2.0	17	88	11	50	50	9	12	28	1.71
151599--151639	18	2.2	20	86	8	59	36	0	0	63	0.95
152284--152321	19	2.0	19	89	0	58	34	18	10	36	1.85
157260--157289	2	15.0	2	100	0	60	50	0	0	50	1.00
157826--157867	2	21.0	2	95	0	75	50	2	0	47	1.14
158155--158203	16	2.9	16	74	11	53	26	2	10	61	1.39
158158--158197	18	2.2	18	86	0	53	20	2	10	67	1.31
164658--164700	15	2.9	15	83	10	54	37	0	0	62	0.95
165401--165468	27	2.7	26	82	11	70	48	0	1	50	1.10
166179--166230	13	4.1	12	78	9	50	63	3	0	32	1.12
166181--166230	26	1.9	26	84	15	68	66	4	0	30	1.10
166441--166495	27	2.0	29	85	7	78	50	3	0	45	1.19
166591--166653	24	2.6	24	78	21	69	41	1	0	57	1.08
166608--166657	21	2.4	19	78	21	55	40	2	0	58	1.10
166661--166701	22	2.0	22	85	9	59	60	7	0	31	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167236--167273	14	2.9	14	84	11	53	44	0	0	55	0.99
171438--171472	2	17.5	2	100	0	70	51	0	0	48	1.00
172513--172542	2	15.0	2	100	0	60	50	0	50	0	1.00
175259--175285	6	4.5	6	100	0	54	70	14	14	0	1.17
175651--175688	19	2.0	19	85	10	51	47	0	2	50	1.15
176244--176283	21	2.0	20	85	5	53	55	0	0	45	0.99
176320--176359	20	2.1	18	86	9	53	55	0	0	45	0.99
176612--176678	14	5.3	14	68	24	51	43	0	0	56	0.99
177245--177300	19	2.8	21	83	8	71	53	1	1	42	1.21
179355--179419	33	2.0	33	90	6	105	44	1	0	53	1.09
179355--179402	15	3.1	14	76	23	51	47	0	0	52	1.00
179346--179412	16	3.9	17	72	20	52	44	1	1	52	1.19
179928--179966	16	2.4	16	78	0	51	48	7	5	38	1.54
180566--180637	27	2.7	28	80	8	96	62	0	0	37	0.95
181008--181081	22	3.2	22	78	17	71	64	1	0	33	1.02
181051--181124	15	5.1	15	67	22	50	58	0	0	41	0.98
180991--181125	25	6.0	22	68	20	75	61	0	0	37	1.01
181360--181399	16	2.4	17	87	4	55	45	12	0	42	1.42
185756--185804	11	4.7	11	76	20	52	63	0	2	34	1.06
185747--185808	30	2.1	30	82	11	74	62	0	1	35	1.05
185732--185809	19	4.2	19	76	7	72	64	0	1	34	1.02
194246--194282	18	2.1	18	94	0	65	32	8	21	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194249--194288	18	2.2	18	86	0	53	32	10	17	40	1.83
195639--195691	16	3.3	16	83	0	61	32	1	1	64	1.15
195991--196022	13	2.3	15	89	10	50	62	0	0	37	0.95
196116--196155	21	2.0	20	85	5	53	40	0	0	60	0.97
196162--196214	15	3.6	14	78	17	54	52	0	0	47	1.00
197426--197532	48	2.2	52	83	8	134	56	0	0	43	0.99
197548--197618	23	3.2	23	73	13	69	56	0	0	43	0.99
197447--197595	13	10.9	13	66	16	52	59	0	0	40	1.03
197928--198039	48	2.3	48	92	0	188	25	24	41	8	1.84
198124--198155	15	2.1	15	94	0	55	68	0	31	0	0.90

Tables:   1   2   3   4   5   6