genome.fa.s417.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold417
Parameters: 2 7 7 80 10 50 1000
Length:  511691

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 614 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296021--296082	27	2.3	27	82	0	79	1	33	3	61	1.22
296146--296234	32	2.8	30	82	14	92	2	30	3	64	1.22
296175--296214	21	2.0	21	90	5	64	0	27	2	70	1.01
296302--296367	33	2.0	34	85	8	91	3	30	3	63	1.24
296328--296373	24	1.9	24	86	0	65	0	32	2	65	1.05
296460--296499	18	2.2	18	86	8	55	7	35	0	57	1.27
296457--296505	11	4.2	12	77	15	50	8	34	0	57	1.29
300820--300864	23	2.0	23	82	4	56	51	15	2	31	1.56
301669--301698	2	15.0	2	92	0	51	46	0	3	50	1.18
305949--305978	1	30.0	1	93	0	51	0	0	3	96	0.21
312486--312528	14	3.1	15	83	12	56	67	0	0	32	0.91
313095--313126	2	16.0	2	100	0	64	50	0	0	50	1.00
313615--313674	16	3.8	16	74	12	52	35	1	6	56	1.35
314212--314275	26	2.5	26	87	5	85	39	1	0	59	1.07
314396--314475	37	2.1	38	80	13	94	46	0	1	52	1.08
314720--314748	14	2.1	14	100	0	58	34	0	6	58	1.25
314817--314875	18	3.3	18	75	15	59	67	1	1	28	1.10
314814--314876	23	2.6	22	82	12	63	66	1	1	30	1.10
314823--314876	12	4.5	12	84	11	67	64	1	1	31	1.14
315166--315201	2	18.0	2	94	0	63	52	0	0	47	1.00
316219--316255	2	18.5	2	94	0	65	0	2	48	48	1.15
321062--321104	17	2.5	17	84	3	59	58	0	2	39	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321296--321346	21	2.4	21	80	6	59	68	0	0	31	0.90
323655--323704	26	1.9	26	83	0	64	64	8	2	26	1.32
323876--323915	17	2.5	15	88	8	53	60	0	0	40	0.97
323876--323924	13	3.3	15	86	11	57	53	0	0	46	1.00
328299--328416	51	2.3	51	84	8	152	32	4	29	33	1.77
328448--328547	51	2.0	51	91	0	164	37	9	26	28	1.86
328483--328924	79	5.6	79	81	4	414	37	12	21	28	1.90
328266--328612	129	2.7	129	82	4	394	34	10	25	29	1.89
331265--331393	51	2.5	51	87	1	186	45	13	13	27	1.80
333458--333489	2	16.0	2	100	0	64	50	0	0	50	1.00
334639--334674	15	2.4	15	95	0	63	30	22	11	36	1.89
335149--335182	18	1.9	17	88	5	50	47	0	2	50	1.16
335328--335369	19	2.1	19	86	13	57	61	0	0	38	0.96
337434--337467	13	2.7	13	90	4	52	32	0	0	67	0.91
337824--337855	6	5.2	6	96	3	55	34	0	3	62	1.11
337987--338034	17	3.2	15	77	16	55	56	0	0	43	0.99
338020--338067	20	2.3	22	82	13	66	60	0	0	39	0.97
338253--338297	20	2.2	21	84	11	58	53	0	0	46	1.00
338572--338609	13	2.6	14	84	15	51	55	0	0	44	0.99
338572--338610	16	2.7	14	88	11	53	53	0	0	46	1.00
338595--338668	24	3.1	24	76	7	80	50	1	0	48	1.09
338767--338810	18	2.4	19	85	11	65	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338780--338840	31	1.9	32	84	15	83	39	1	0	59	1.08
338789--338852	31	2.1	31	82	11	78	40	1	0	57	1.08
342127--342166	21	1.9	21	90	10	64	60	0	0	40	0.97
342142--342192	12	4.4	11	78	11	57	62	0	0	37	0.95
344679--344735	25	2.2	25	81	3	60	50	5	8	35	1.56
345753--345798	24	1.9	24	86	8	67	43	0	4	52	1.21
346260--346289	12	2.5	12	100	0	60	50	0	6	43	1.28
346530--346566	3	12.3	3	100	0	74	32	0	0	67	0.91
347117--347203	5	18.0	5	70	19	60	56	2	2	39	1.25
347102--347178	19	3.8	19	74	11	66	58	1	5	35	1.29
347528--347593	30	2.4	26	79	16	78	54	0	0	45	0.99
347535--347598	30	2.0	30	85	8	83	57	0	0	42	0.98
347581--347631	15	3.5	15	74	12	52	45	0	0	54	0.99
347737--347772	17	2.1	17	94	0	63	52	0	19	27	1.46
348568--348599	2	16.0	2	93	0	55	0	53	0	46	1.00
348858--348911	21	2.6	21	82	11	58	64	0	1	33	1.04
348858--348898	20	2.1	20	86	4	57	65	0	2	31	1.05
348876--348924	21	2.3	23	83	13	61	59	0	2	38	1.09
349180--349218	2	20.0	2	94	5	71	48	0	0	51	1.00
349347--349397	14	3.4	14	75	19	50	62	0	1	35	1.06
350902--350965	26	2.5	26	77	7	69	42	0	0	57	0.98
360037--360129	1	93.0	1	76	0	69	86	5	8	0	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360043--360126	32	2.7	32	96	1	152	85	5	8	0	0.73
364020--364231	50	4.2	50	90	1	316	30	18	18	32	1.95
364598--364653	29	1.9	29	92	0	94	50	0	0	50	1.00
364597--364663	29	2.3	29	84	0	89	47	0	0	52	1.00
365000--365046	23	2.1	23	88	11	71	57	0	0	42	0.98
365029--365068	19	2.2	19	86	13	57	60	0	0	40	0.97
365344--365382	16	2.5	15	83	8	51	53	0	0	46	1.00
365796--365833	19	2.0	19	90	10	60	44	0	2	52	1.14
367497--367521	10	2.5	10	100	0	50	24	0	0	76	0.80
367572--367611	13	3.1	13	85	0	53	60	10	2	27	1.42
371172--371211	19	2.1	19	86	9	55	47	0	0	52	1.00
371199--371229	16	1.9	16	100	0	62	45	3	0	51	1.17
371703--371737	13	2.8	12	87	8	52	37	5	0	57	1.23
376672--376725	28	2.0	28	92	3	92	59	14	12	12	1.62
379472--379508	19	1.9	19	100	0	74	48	0	13	37	1.43
379501--379712	107	2.0	108	94	0	372	38	7	9	44	1.64
381966--382004	18	2.1	18	90	4	60	41	0	0	58	0.98
382775--382986	106	2.0	106	94	0	370	35	15	11	37	1.83
382814--383022	106	2.0	105	82	5	251	37	17	10	34	1.84
383307--383341	17	2.0	18	88	5	54	54	0	0	45	0.99
383341--383392	11	4.6	11	83	4	68	36	1	0	61	1.07
383324--383400	23	3.4	23	75	7	59	42	1	0	55	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383867--383920	18	3.0	18	75	5	56	33	0	1	64	1.04
384192--384225	16	2.1	16	94	0	59	58	0	0	41	0.98
384236--384278	19	2.3	19	88	8	61	62	0	0	37	0.95
384214--384264	24	2.0	26	81	7	61	64	1	1	31	1.15
384281--384326	22	2.0	23	91	4	76	56	0	0	43	0.99
384243--384339	49	2.0	48	82	9	117	54	0	0	45	0.99
384247--384328	30	2.5	31	78	18	80	56	0	0	43	0.99
385446--385548	32	3.0	32	72	18	84	43	0	2	52	1.22
386848--386882	17	2.1	17	88	0	52	37	8	20	34	1.83
387719--387778	30	2.0	30	100	0	120	46	3	13	36	1.60
389152--389250	17	5.5	17	70	19	67	46	2	1	50	1.19
389143--389214	38	1.9	37	91	2	117	47	1	0	51	1.09
391136--391183	13	3.4	13	80	13	51	56	4	4	35	1.38
391822--391859	2	19.5	2	94	5	69	50	0	0	50	1.00
396995--397042	22	2.2	22	96	0	87	31	16	10	41	1.82
400302--400415	57	2.0	56	84	5	149	49	14	9	26	1.75
400507--400552	13	3.7	13	83	11	53	60	2	0	36	1.09
402218--402303	38	2.3	38	86	6	113	38	18	19	23	1.93
405104--405142	13	3.0	13	88	0	60	35	12	17	33	1.88
407657--407727	20	3.6	20	76	14	67	30	12	16	39	1.86
409202--409426	84	2.7	84	78	1	236	28	21	17	32	1.96
411868--411892	11	2.3	11	100	0	50	48	8	16	28	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412229--412277	13	3.7	14	76	13	59	46	0	0	53	1.00
412594--412674	26	3.0	26	75	8	74	50	0	0	49	1.00
412615--412675	26	2.3	26	82	2	77	52	0	0	47	1.00
412769--412807	10	4.1	10	80	12	55	64	0	0	35	0.94
413107--413181	26	2.7	30	80	17	90	49	0	0	50	1.00
413114--413168	27	2.0	26	86	6	74	49	0	0	50	1.00
413365--413404	18	2.2	18	90	0	62	37	0	0	62	0.95
413567--413686	35	3.5	35	98	1	233	24	13	14	48	1.79
413829--413908	12	6.6	12	76	12	58	55	0	0	45	0.99
413816--413916	48	2.2	44	78	13	114	54	0	0	45	0.99

Tables:   1   2   3   4   5   6