genome.fa.s417.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold417
Parameters: 2 7 7 80 10 50 1000
Length:  511691

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 614 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413840--413913	23	3.1	23	74	18	71	56	0	0	43	0.99
413981--414014	15	2.3	15	89	0	50	20	0	0	79	0.73
415873--415922	20	2.3	22	80	13	59	64	0	2	34	1.05
416721--416766	16	2.9	16	78	21	53	47	0	0	52	1.00
416719--416765	22	2.1	22	96	0	85	46	0	0	53	1.00
416970--417270	162	1.9	161	86	4	435	25	22	18	32	1.97
417644--417679	18	2.0	18	89	10	56	72	0	0	27	0.85
417657--417691	14	2.6	13	86	8	52	71	2	0	25	1.00
418032--418075	19	2.3	18	92	7	70	65	0	2	31	1.05
418232--418291	26	2.3	27	83	11	81	48	0	1	50	1.11
418245--418295	21	2.4	21	78	15	52	50	0	1	47	1.12
418284--418336	19	2.9	18	81	10	54	41	0	0	58	0.98
418307--418341	17	2.0	18	88	5	54	42	0	0	57	0.99
418402--418440	11	3.5	11	86	6	53	66	0	0	33	0.92
418792--418827	8	4.4	8	89	3	54	58	0	5	36	1.22
419356--419380	12	2.1	12	100	0	50	76	0	0	24	0.80
419537--419617	42	2.0	42	83	9	105	49	0	0	50	1.00
420092--420156	19	3.7	16	72	21	58	36	4	1	56	1.29
420119--420159	19	2.2	19	90	0	64	36	4	0	58	1.20
420266--420305	15	2.5	17	84	8	57	45	0	0	55	0.99
420259--420316	28	2.1	28	83	6	73	46	0	0	53	1.00
420558--420660	8	11.5	8	69	24	55	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
420558--420670	10	11.0	10	73	11	70	39	0	0	59	1.04
420535--420623	44	2.0	45	82	8	110	44	0	1	53	1.07
420558--420660	27	3.7	27	74	8	91	39	0	0	60	0.97
420601--420658	19	3.0	19	89	2	71	37	0	0	62	0.96
421117--421198	29	2.6	32	80	16	84	48	0	0	51	1.00
423427--423458	16	1.9	17	93	6	57	37	0	6	56	1.25
423478--423527	20	2.4	21	80	6	57	42	2	0	56	1.11
423845--423883	19	2.1	19	90	9	62	53	0	2	43	1.14
426680--426750	32	2.2	32	80	5	81	53	0	0	46	1.00
426815--426853	15	2.4	16	83	8	53	43	0	0	56	0.99
426803--426860	22	2.6	21	81	15	64	44	0	0	55	0.99
429207--429257	17	2.9	18	75	21	54	70	1	1	25	1.08
431385--431418	18	1.9	17	88	5	50	35	2	0	61	1.11
433234--433271	20	1.9	19	89	5	58	52	0	2	44	1.14
433475--433520	16	2.8	17	77	16	51	60	4	0	34	1.16
433489--433529	15	2.8	15	79	13	50	63	0	0	36	0.95
433853--433916	30	2.1	30	94	0	110	54	1	1	42	1.19
435354--435393	3	13.3	3	100	0	80	67	0	0	32	0.91
435754--435791	13	3.0	13	84	3	51	50	0	0	50	1.00
435754--435787	13	2.6	13	90	9	52	44	0	0	55	0.99
436560--436584	2	12.5	2	100	0	50	48	0	0	52	1.00
436689--436730	22	1.9	22	90	0	66	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437404--437507	53	2.0	53	81	7	122	50	0	0	47	1.14
438288--438332	22	2.0	22	83	8	56	77	4	6	11	1.09
441286--441314	7	4.3	7	91	8	51	58	0	0	41	0.98
448440--448490	14	3.7	14	75	12	52	39	1	0	58	1.09
448742--448806	4	15.5	4	81	12	69	49	1	0	49	1.10
449289--449331	14	2.9	14	77	16	50	46	0	0	53	1.00
449501--449558	24	2.4	23	77	8	62	60	1	1	36	1.17
450011--450049	20	2.1	19	90	9	62	20	2	7	69	1.26
451098--451155	20	3.0	18	77	20	55	39	0	1	58	1.08
451189--451257	11	6.1	11	72	12	50	37	1	0	60	1.06
451186--451251	22	2.9	22	78	13	71	34	1	0	63	1.04
451656--451719	31	2.1	31	85	11	87	40	0	0	59	0.97
451675--451730	19	2.9	19	76	12	53	41	0	0	58	0.98
451686--451729	20	2.1	22	84	16	58	40	0	0	59	0.98
451704--451763	15	3.9	15	74	12	50	45	0	0	55	0.99
456100--456157	22	2.6	22	76	12	57	39	0	3	56	1.16
456327--456367	22	1.9	22	85	5	57	63	2	0	34	1.08
457226--457263	9	4.3	9	84	15	53	65	0	0	34	0.93
457460--457503	21	2.1	21	91	4	72	47	0	4	47	1.22
458344--458396	18	2.8	18	80	11	54	66	0	0	33	0.92
458352--458396	10	4.5	10	83	8	56	66	0	0	33	0.92
458352--458410	21	2.9	20	82	7	57	62	0	5	32	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458435--458478	21	2.0	22	87	12	65	47	0	6	45	1.29
458477--458521	10	4.3	10	80	8	54	60	0	2	37	1.09
458483--458538	29	2.0	28	82	10	69	58	3	0	37	1.15
460446--460478	17	1.9	17	93	0	57	42	0	0	57	0.98
461161--461205	21	2.2	21	92	4	74	48	0	4	46	1.22
461706--461764	16	3.7	16	76	13	59	44	0	3	52	1.17
462069--462113	16	2.8	16	83	6	56	62	2	0	35	1.08
464351--464393	19	2.3	19	96	4	79	67	9	9	13	1.42
465863--465890	2	14.0	2	100	0	56	50	0	0	50	1.00
466013--466070	17	3.2	18	81	16	75	32	0	1	65	1.03
466318--466359	18	2.3	19	88	12	61	42	7	0	50	1.30
467007--467059	19	2.7	19	82	11	63	35	0	3	60	1.15
468295--468336	17	2.5	17	85	14	61	30	0	0	69	0.89
469902--469946	20	2.2	20	81	18	58	42	0	0	57	0.98
470134--470167	3	11.3	3	100	0	68	67	0	0	32	0.91
470381--470449	26	2.8	25	74	10	61	59	0	0	40	0.97
470378--470442	32	2.1	30	82	5	76	63	0	0	36	0.95
471161--471188	6	4.7	6	100	0	56	32	0	0	67	0.91
471626--471721	13	7.4	14	64	23	50	46	0	1	52	1.07
472043--472141	17	6.2	16	72	9	69	52	1	0	46	1.07
472118--472147	15	2.0	15	93	0	51	50	3	0	46	1.18
472410--472457	17	3.3	13	78	21	51	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472413--472449	17	2.2	17	100	0	74	40	0	0	59	0.97
475920--475969	21	2.4	20	81	15	57	42	12	2	44	1.53
480556--480585	15	2.1	14	93	6	51	90	3	0	6	0.56
480649--480681	11	2.9	12	86	13	52	66	0	33	0	0.92
480886--480942	7	8.7	7	72	14	50	59	0	0	40	0.97
480867--480946	38	2.1	39	83	4	99	55	0	0	45	0.99
480887--480938	24	2.1	25	85	3	70	59	0	0	40	0.97
480920--480980	19	3.1	20	71	17	56	57	0	1	40	1.08
480885--480945	32	1.9	32	83	6	79	59	0	0	40	0.98
481048--481100	20	2.6	20	78	3	61	45	1	1	50	1.23
481706--481791	40	2.2	38	83	10	102	53	1	1	44	1.15
481713--481791	38	2.1	39	83	9	101	53	1	1	44	1.16
482189--482248	18	3.6	17	75	24	65	58	1	0	40	1.08
485688--485722	13	2.7	13	90	0	52	71	14	8	5	1.29
486920--486967	24	2.1	24	88	7	73	43	0	0	56	0.99
486920--486985	22	2.9	23	82	12	75	39	0	0	60	0.97
488028--488091	21	3.1	21	70	18	62	53	4	3	39	1.38
488059--488108	24	2.1	23	82	10	57	56	6	0	38	1.24
490467--490508	21	1.9	21	85	9	57	45	0	0	54	0.99
490540--490589	23	2.4	19	81	18	55	44	0	2	54	1.11
490779--490809	6	5.0	6	96	4	53	0	19	16	64	1.29
491155--491192	14	2.6	15	84	15	53	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491372--491430	27	2.1	29	84	6	77	42	0	0	57	0.98
491364--491489	44	2.9	41	72	20	105	45	0	0	53	1.11
492765--492828	32	2.0	33	84	9	87	51	1	7	39	1.40
494615--494652	12	3.3	12	85	10	53	68	0	5	26	1.11
494655--494768	60	1.9	60	80	10	135	58	0	1	38	1.14
499044--499073	14	2.1	14	100	0	60	36	23	6	33	1.81
503122--503176	25	2.2	26	83	9	69	56	3	5	34	1.40
503180--503233	17	3.3	17	72	25	53	57	3	0	38	1.17
503587--503652	32	2.0	33	83	13	84	54	4	1	39	1.30
503784--503823	15	2.5	16	88	8	55	57	0	0	42	0.98

Tables:   1   2   3   4   5   6