genome.fa.s426.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold426
Parameters: 2 7 7 80 10 50 1000
Length:  634051

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 702 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131215--131269	17	3.2	17	73	19	60	45	0	0	54	0.99
131297--131340	21	2.1	21	87	8	63	22	9	2	65	1.32
131589--131631	18	2.4	17	84	7	50	69	2	2	25	1.12
131944--132009	24	2.6	25	79	11	64	54	7	3	34	1.44
141156--141197	21	2.0	21	90	0	66	26	7	50	16	1.71
141489--141539	23	2.3	21	87	12	68	15	7	0	76	1.00
141586--141633	18	2.6	18	80	9	51	52	0	0	47	1.00
141842--141890	21	2.3	22	85	3	64	55	0	2	42	1.11
142135--142164	2	15.0	2	100	0	60	50	0	0	50	1.00
143621--143657	17	2.2	17	90	0	56	54	5	2	37	1.38
143754--143787	12	2.8	12	91	8	52	55	0	0	44	0.99
150392--150431	12	3.2	12	85	3	53	15	5	0	80	0.88
150654--150710	27	2.0	28	86	6	80	52	0	0	47	1.00
150680--150733	18	3.0	18	75	5	56	55	0	0	44	0.99
151587--151617	11	2.7	12	95	5	55	45	3	0	51	1.17
152148--152194	16	3.1	16	84	6	62	51	2	0	46	1.13
152891--152986	32	3.1	32	82	8	92	37	1	2	59	1.16
152846--152961	50	2.4	44	77	14	115	38	0	3	56	1.22
152922--153009	29	3.0	29	83	8	99	36	0	1	62	1.03
152937--153009	15	4.9	15	77	9	69	34	0	1	64	1.02
153629--153685	19	3.1	18	76	21	55	50	1	0	47	1.11
154598--154646	20	2.5	20	83	3	64	32	4	0	63	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154784--154812	13	2.2	13	100	0	58	58	6	0	34	1.25
157184--157223	18	2.2	18	86	8	55	45	0	0	55	0.99
157563--157613	23	2.3	23	86	3	68	29	0	5	64	1.17
163315--163374	23	2.6	23	79	15	61	58	1	3	36	1.25
163364--163454	9	9.2	11	71	24	78	54	0	0	45	0.99
163357--163439	29	2.9	28	76	13	89	56	0	0	43	0.99
163366--163421	20	2.8	20	82	12	64	51	0	0	48	1.00
164429--164545	15	8.3	15	69	19	58	52	1	0	46	1.11
164424--164549	52	2.4	53	77	12	136	50	2	0	46	1.14
164455--164565	52	2.1	52	79	11	120	50	5	0	44	1.25
165361--165408	24	2.0	24	88	11	73	45	0	2	52	1.12
165367--165416	24	2.0	25	84	3	66	56	0	0	44	0.99
165844--165868	13	1.9	13	100	0	50	88	0	12	0	0.53
166414--166438	3	8.3	3	100	0	50	32	0	0	68	0.90
168345--168437	40	2.3	40	82	12	104	35	1	1	62	1.10
168355--168433	21	3.8	20	76	14	72	34	1	1	63	1.11
168770--168816	14	3.0	16	78	15	62	48	0	0	51	1.00
168773--168816	15	3.0	15	83	6	54	50	0	0	50	1.00
168766--168828	30	2.1	29	82	8	74	55	3	0	41	1.16
170395--170445	17	2.9	17	82	2	57	54	0	1	43	1.11
170385--170425	2	20.5	2	94	0	73	48	0	2	48	1.14
170522--170965	224	2.0	224	88	2	660	44	9	8	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172836--172875	17	2.4	17	87	4	55	47	7	10	35	1.65
175258--175335	18	4.2	17	77	18	75	41	0	0	58	0.98
175247--175332	40	2.2	40	85	8	113	44	0	0	55	0.99
175265--175370	27	3.8	28	69	20	71	46	0	0	53	1.00
175324--175391	27	2.4	27	85	9	82	52	0	0	47	1.00
175923--175948	3	8.7	3	100	0	52	30	34	0	34	1.58
181059--181113	8	6.9	8	74	15	51	45	0	0	54	0.99
181051--181109	18	3.5	18	72	25	65	47	0	0	52	1.00
181043--181116	32	2.2	33	92	4	123	45	0	0	54	1.00
181052--181099	14	3.1	14	73	21	51	47	0	0	52	1.00
181065--181164	16	6.2	17	72	23	65	36	0	0	64	0.94
181056--181161	32	3.3	34	83	8	116	36	0	0	63	0.95
181108--181168	21	2.9	21	83	9	70	27	0	0	72	0.85
181107--181173	17	4.1	16	76	21	68	26	0	0	73	0.84
181591--181649	22	2.5	24	79	15	68	35	1	0	62	1.05
182044--182088	19	2.3	20	88	3	65	42	2	0	55	1.12
182079--182113	14	2.6	14	86	4	54	45	0	2	51	1.16
182145--182195	15	3.5	15	74	15	54	54	0	0	45	0.99
182143--182199	28	2.0	29	90	10	91	52	0	0	47	1.00
182138--182188	13	3.4	16	71	20	56	45	0	0	54	0.99
182856--182884	2	14.5	2	100	0	58	48	0	0	51	1.00
183023--183066	22	2.1	21	84	12	56	47	0	2	50	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184614--184675	29	2.1	29	81	0	70	40	0	3	56	1.15
184637--184679	15	2.9	14	79	6	50	37	0	0	62	0.95
184621--184679	29	2.0	29	90	0	91	33	0	3	62	1.12
184708--184760	22	2.4	22	75	6	54	50	0	3	45	1.19
184731--184779	24	2.1	23	85	11	64	55	0	0	44	0.99
184854--184913	21	3.0	19	80	17	68	38	1	1	58	1.18
185126--185165	20	2.0	20	85	9	55	35	0	0	65	0.93
185134--185197	18	3.3	19	73	8	58	42	3	0	54	1.16
185308--185367	26	2.3	26	82	5	77	45	0	3	51	1.17
185358--185470	18	6.2	16	73	19	57	35	1	0	62	1.05
185377--185465	5	17.4	5	71	20	51	34	2	0	62	1.07
185322--185464	26	5.6	25	70	17	89	39	1	0	58	1.12
185391--185470	41	2.0	41	85	5	108	32	1	0	66	1.00
185426--185467	18	2.5	17	85	11	59	30	2	0	66	1.04
185395--185460	23	2.9	22	82	8	78	34	1	0	63	1.04
186937--186975	18	2.2	18	86	9	53	56	0	0	43	0.99
187457--187609	11	14.1	11	64	21	65	40	0	0	58	1.08
187461--187519	17	3.4	17	71	2	55	38	0	0	61	0.96
187532--187602	24	2.8	25	85	12	92	42	1	0	56	1.08
187565--187617	21	2.6	20	79	8	54	35	1	0	62	1.06
188114--188224	19	6.3	18	68	20	74	38	0	1	59	1.08
188158--188216	14	4.1	14	76	22	52	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188164--188273	33	3.3	33	73	15	93	36	1	0	60	1.13
188184--188221	14	2.7	15	88	8	53	36	0	0	63	0.95
188132--188238	16	6.6	15	71	23	58	37	0	0	60	1.09
188209--188248	19	2.0	21	90	9	66	32	5	0	62	1.17
190156--190212	18	3.0	19	84	5	62	24	8	0	66	1.20
192826--192859	2	17.0	2	100	0	68	50	0	0	50	1.00
193327--193358	2	16.0	2	100	0	64	50	0	0	50	1.00
198703--198739	19	1.9	19	100	0	74	29	16	5	48	1.68
201406--201449	20	2.1	21	88	12	65	36	2	0	61	1.09
201666--201717	26	2.0	26	85	7	70	32	1	0	65	1.04
201665--201714	21	2.4	20	80	12	57	32	2	0	66	1.03
201655--201726	37	2.0	35	81	10	83	36	1	0	62	1.04
201708--201748	17	2.4	17	83	0	55	31	2	2	63	1.20
202418--202478	29	2.1	29	90	0	95	40	1	1	55	1.19
203404--203434	2	15.0	2	93	6	53	48	3	0	48	1.17
205737--205774	19	2.1	18	90	5	58	42	0	0	57	0.98
205903--205964	32	1.9	33	93	3	108	45	0	1	53	1.10
205898--206073	87	2.0	89	84	4	232	36	2	5	56	1.34
205998--206061	32	2.0	33	87	3	94	34	6	4	54	1.46
205998--206077	33	2.5	31	82	10	88	33	5	5	56	1.43
206018--206126	23	5.0	23	71	20	74	38	2	1	56	1.24
206067--206105	12	3.3	12	80	20	55	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
206832--206889	18	3.4	17	73	20	57	29	1	0	68	0.99
207057--207096	17	2.3	18	86	4	55	45	0	0	55	0.99
208166--208675	259	2.0	258	88	1	754	40	6	8	45	1.59
209596--209646	23	2.3	22	83	10	59	58	0	0	41	0.98
211548--211638	44	2.1	44	97	0	173	34	6	23	36	1.81
212002--212027	2	13.0	2	100	0	52	50	0	0	50	1.00
213368--213400	17	2.0	17	88	5	50	30	12	0	57	1.35
214523--214550	2	14.0	2	100	0	56	50	0	0	50	1.00
214712--214776	23	2.7	24	72	11	62	53	0	0	46	1.00
215971--216039	4	18.8	4	75	19	62	76	0	23	0	0.78

Tables:   1   2   3   4   5   6