genome.fa.s426.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold426
Parameters: 2 7 7 80 10 50 1000
Length:  634051

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 702 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435493--435751	100	2.6	100	94	1	439	30	18	20	29	1.97
440145--440403	50	5.2	50	89	4	398	30	19	20	28	1.97
440145--440403	100	2.6	100	95	1	457	30	19	20	28	1.97
442965--443019	15	3.7	15	72	13	51	60	3	0	36	1.15
443089--443140	14	3.8	14	78	9	54	76	1	1	19	0.97
443499--443532	17	2.1	17	88	5	52	47	8	5	38	1.59
443940--443990	21	2.6	19	73	11	50	45	0	7	47	1.32
447498--447537	15	2.5	16	88	8	55	57	0	0	42	0.98
447498--447540	16	2.6	17	85	10	63	55	0	0	44	0.99
447707--447774	32	2.1	31	81	10	75	51	1	4	42	1.31
452952--453020	6	11.0	6	90	3	93	39	0	0	60	0.97
455743--455831	46	1.9	46	100	0	178	25	8	8	56	1.60
457229--457259	16	1.9	16	93	0	53	35	3	6	54	1.42
462304--462346	17	2.5	17	85	11	52	72	2	4	20	1.14
462509--462576	21	3.3	20	75	22	61	45	0	0	54	0.99
466163--466206	21	2.0	22	86	4	63	36	18	13	31	1.90
467217--467257	6	6.8	6	91	0	64	17	51	9	21	1.74
467217--467257	12	3.4	12	96	0	73	17	51	9	21	1.74
467964--468097	33	4.1	32	75	9	117	20	14	33	30	1.93
468133--468207	33	2.3	33	85	0	96	16	20	33	30	1.94
468127--468216	33	2.7	32	72	13	83	18	18	33	28	1.95
469449--469496	24	2.0	24	95	0	87	41	31	4	22	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475278--475307	12	2.5	12	94	0	51	80	0	20	0	0.72
475534--475594	23	2.6	24	82	7	72	57	0	0	42	0.98
475537--475611	31	2.4	31	77	20	84	58	1	0	40	1.06
475695--475738	20	2.2	20	95	0	79	34	4	0	61	1.16
475970--476029	21	2.8	21	82	10	68	51	0	0	48	1.00
475970--476016	23	2.1	23	88	7	71	51	0	0	48	1.00
476624--476658	15	2.4	14	90	4	52	22	2	0	74	0.95
477344--477380	11	3.3	11	92	3	56	40	0	0	59	0.97
477463--477498	3	12.0	3	100	0	72	66	0	0	33	0.92
478162--478204	16	2.7	17	82	13	56	30	0	0	69	0.88
479890--479935	22	2.1	22	92	8	76	41	0	0	58	0.98
479929--479972	21	2.1	21	83	8	54	47	0	4	47	1.22
481222--481270	3	16.3	3	100	0	98	0	0	32	67	0.91
482496--482520	13	1.9	13	100	0	50	36	16	16	32	1.90
482590--482614	13	1.9	13	100	0	50	32	16	16	36	1.90
482623--482742	47	2.4	50	89	6	174	36	17	17	28	1.93
489212--489262	23	2.3	23	90	6	79	70	0	0	29	0.87
489215--489270	28	2.0	28	82	6	69	71	1	0	26	0.96
489212--489271	23	2.7	21	85	12	75	70	1	0	28	0.97
489227--489262	11	3.2	11	88	4	54	69	0	0	30	0.89
489310--489402	30	3.2	29	74	14	84	54	0	0	45	0.99
489360--489427	35	1.9	36	84	3	93	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489667--489725	31	1.9	31	82	6	75	50	0	0	49	1.00
490413--490454	20	2.0	21	86	4	59	33	2	7	57	1.39
490413--490462	20	2.5	20	80	3	57	38	2	6	54	1.37
492083--492125	16	2.6	17	81	3	52	37	0	2	60	1.10
493397--493452	19	2.9	19	75	15	62	41	0	0	58	0.98
493391--493474	37	2.3	35	78	15	91	45	0	0	54	0.99
493917--493974	28	2.1	28	96	0	107	32	10	31	25	1.89
495016--495099	18	4.7	18	68	21	61	40	0	1	58	1.06
495851--497019	96	12.2	96	72	9	447	20	3	49	26	1.64
495908--497019	48	23.2	48	69	11	356	20	3	49	26	1.64
496040--496121	24	3.4	24	70	18	80	18	0	51	30	1.47
495814--497178	192	7.1	190	73	9	729	20	3	49	26	1.64
495840--496785	144	6.6	142	72	9	590	19	3	50	26	1.63
496934--497019	45	1.9	45	87	0	127	23	0	51	25	1.49
497093--497315	30	8.0	27	80	12	145	18	4	45	30	1.71
496040--497172	96	11.8	96	72	6	623	20	3	49	27	1.66
495842--497181	48	27.9	47	70	9	291	19	3	49	26	1.65
497147--497328	90	2.1	87	88	3	265	19	5	44	30	1.73
497174--497328	30	5.2	30	95	0	256	19	5	45	29	1.74
497393--497589	87	2.3	87	80	3	234	19	5	44	29	1.74
498197--498232	9	3.9	9	89	7	54	63	2	0	33	1.08
498197--498232	19	1.9	18	88	5	54	63	2	0	33	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498231--498293	9	6.8	9	75	20	58	46	0	0	53	1.00
498230--498293	16	4.1	16	74	10	60	46	0	0	53	1.00
498416--498449	3	11.3	3	100	0	68	32	0	0	67	0.91
498932--498980	6	8.2	6	83	0	62	8	0	73	18	1.07
498929--498975	12	3.9	12	91	0	76	8	0	74	17	1.05
499037--499695	48	13.7	48	78	5	449	20	3	47	27	1.67
499742--500173	48	8.8	48	68	8	258	17	6	43	31	1.76
499710--500107	99	4.0	100	95	2	712	16	7	43	33	1.75
499710--500107	201	2.0	198	96	1	724	16	7	43	33	1.75
499740--500173	99	4.4	99	87	2	264	17	6	44	31	1.75
500597--500659	5	13.2	5	73	15	53	53	0	1	44	1.10
500607--500670	20	3.1	20	75	14	67	51	0	1	46	1.10
500633--500697	31	2.1	31	82	5	78	43	0	1	55	1.09
500660--500704	17	2.5	19	85	10	67	40	0	0	60	0.97
501511--501570	21	2.9	22	78	7	56	58	0	1	40	1.08
501967--501998	7	4.6	7	96	0	55	84	0	3	12	0.74
501967--502010	14	3.0	14	83	6	52	79	0	6	13	0.92
502393--502475	34	2.3	35	85	8	114	66	0	1	32	1.00
502406--502461	23	2.5	24	85	11	82	67	0	1	30	1.01
502401--502466	11	6.0	11	83	11	73	68	0	1	30	0.99
502404--502477	23	3.0	26	76	11	75	67	0	1	31	0.99
503363--503397	15	2.2	16	90	5	54	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503418--503475	18	3.2	18	79	13	57	44	0	0	55	0.99
503434--503475	19	2.4	17	84	11	57	42	0	0	57	0.99
504289--504331	19	2.2	20	84	8	54	62	2	4	30	1.28
506803--506843	21	2.0	20	90	4	64	39	9	14	36	1.79
509754--509790	2	19.0	2	94	5	67	51	0	0	48	1.00
512753--512833	24	3.5	22	73	18	67	64	0	2	33	1.07
512781--512826	11	4.4	11	81	13	53	65	0	0	34	0.93
512753--512846	23	4.0	22	74	17	75	62	0	3	34	1.11
513033--513084	20	2.7	20	85	8	63	48	7	0	44	1.31
513307--513346	21	2.0	21	90	5	64	35	5	2	57	1.34
514009--514053	14	3.3	14	75	25	51	42	2	2	53	1.25
514237--514293	30	1.9	30	82	7	71	38	3	7	50	1.46
514427--514465	17	2.4	17	86	4	53	43	2	2	51	1.29
515076--515116	18	2.1	20	86	13	59	36	0	0	63	0.95
515076--515118	20	2.1	21	86	4	61	34	0	0	65	0.93
516158--516218	19	3.2	19	82	15	72	68	1	0	29	0.99
516173--516227	19	2.9	19	74	12	60	69	1	0	29	0.99
516164--516235	26	2.8	25	76	17	76	66	1	0	31	1.00
516278--516324	24	1.9	24	83	12	60	42	0	2	55	1.12
516928--516970	19	2.3	19	87	0	59	41	0	2	55	1.12
517387--517430	20	2.1	21	83	4	54	40	9	2	47	1.48
519394--519444	15	3.3	15	73	15	50	45	3	0	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
519394--519456	30	2.0	32	84	6	85	42	4	0	52	1.22
519422--519485	33	1.9	34	81	9	78	43	3	0	53	1.16
519746--519803	13	4.5	13	78	8	57	39	0	0	60	0.97
519746--519805	26	2.3	25	77	8	66	41	0	0	58	0.98
519899--519940	20	2.2	20	86	4	59	42	0	0	57	0.99
520253--520305	2	26.5	2	88	0	79	43	0	1	54	1.11
520253--520305	20	2.7	20	96	0	97	43	0	1	54	1.11
520851--520892	2	21.0	2	95	0	75	47	0	2	50	1.14
521608--521648	14	3.0	14	80	13	50	36	0	0	63	0.95
524683--524715	16	2.0	17	94	5	59	66	0	0	33	0.92

Tables:   1   2   3   4   5   6