genome.fa.s426.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold426
Parameters: 2 7 7 80 10 50 1000
Length:  634051

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 702 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
303066--303123	20	2.9	20	82	5	64	62	5	3	29	1.33
303550--303602	21	2.6	21	75	16	58	3	16	1	77	1.01
304837--304868	15	2.1	15	94	0	55	46	3	0	50	1.17
308039--308076	19	2.1	19	95	5	69	55	0	0	44	0.99
309084--309130	15	3.2	15	78	6	51	25	2	2	70	1.10
309099--309172	25	2.8	26	80	10	80	28	0	5	66	1.14
309343--309379	16	2.2	18	85	9	51	62	5	2	29	1.31
309977--310005	2	14.5	2	100	0	58	48	0	0	51	1.00
312656--312696	8	4.6	9	85	14	50	78	0	0	21	0.76
318343--318370	3	9.3	3	100	0	56	35	0	0	64	0.94
318810--318854	2	22.5	2	90	0	72	46	0	0	53	1.00
318989--319040	2	26.0	2	88	0	68	44	1	5	48	1.38
321433--321511	39	2.0	39	100	0	158	40	17	11	30	1.85
324481--324557	28	2.7	29	76	13	86	63	1	1	33	1.11
324481--324567	30	3.0	28	78	11	86	58	2	2	36	1.23
324825--324849	7	3.6	7	100	0	50	68	0	0	32	0.90
325880--325917	19	1.9	19	89	5	58	44	0	0	55	0.99
325880--325918	20	2.0	20	89	0	60	46	0	0	53	1.00
325881--325924	20	2.2	20	83	0	52	52	0	0	47	1.00
326017--326060	19	2.4	19	80	3	54	56	0	0	43	0.99
326653--326946	159	1.8	159	87	1	437	26	21	18	32	1.97
326653--326981	159	2.1	159	84	2	428	26	20	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
334966--335023	29	2.0	30	83	10	75	29	1	3	65	1.19
335089--335144	23	2.4	24	83	13	73	55	0	1	42	1.10
335075--335146	24	2.8	25	78	14	76	55	1	2	40	1.23
336007--336091	16	5.4	16	78	12	86	36	0	5	57	1.23
336005--336091	32	2.8	32	91	1	131	37	0	5	56	1.23
336794--336845	28	1.9	26	92	7	86	63	5	1	28	1.28
336794--336857	28	2.3	27	86	7	85	62	6	1	29	1.29
338087--338177	30	3.0	30	95	0	155	49	16	8	25	1.74
338254--338291	17	2.3	18	86	13	55	28	0	0	71	0.87
339073--339130	3	19.3	3	100	0	116	34	0	0	65	0.93
339716--339748	8	4.2	8	88	7	50	33	0	0	66	0.92
346118--346161	23	1.9	23	95	0	79	25	11	9	54	1.65
351018--351064	23	2.0	23	100	0	94	23	8	12	55	1.64
355297--355321	12	2.1	12	100	0	50	68	8	8	16	1.38
356931--356972	20	2.2	19	86	4	57	59	0	0	40	0.97
356939--356990	12	4.1	12	83	11	50	51	0	0	48	1.00
357056--357118	26	2.5	26	87	7	85	36	1	4	57	1.30
357488--357533	21	2.2	20	84	3	56	69	0	0	30	0.89
358040--358084	21	2.0	24	87	12	69	26	0	0	73	0.84
358262--358309	25	1.9	25	86	0	69	58	0	2	39	1.10
358430--358535	8	12.6	8	71	22	67	62	0	0	36	1.02
358426--358534	35	3.3	34	73	8	100	61	0	0	37	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358827--358884	21	2.8	21	78	21	68	65	0	0	34	0.93
358841--358882	16	2.6	16	84	0	57	66	0	0	33	0.92
358848--358885	11	3.4	11	82	17	51	65	0	0	34	0.93
358827--358921	32	3.0	32	76	15	90	62	1	0	36	1.03
358841--358945	32	3.2	32	80	10	106	60	0	0	39	1.04
359592--359634	23	1.9	23	90	4	70	46	0	2	51	1.13
359593--359642	22	2.2	23	85	3	66	52	0	2	46	1.12
359723--359750	3	9.3	3	100	0	56	32	0	0	67	0.91
360141--360191	11	4.8	11	81	16	54	64	0	1	33	1.05
360151--360242	8	11.6	8	69	18	50	58	0	0	41	0.98
360156--360228	19	4.3	18	74	22	68	60	0	0	39	0.97
360730--360769	3	13.7	3	89	5	64	70	2	0	27	1.01
367755--367791	12	3.0	13	88	7	51	0	24	45	29	1.53
372128--372211	33	2.6	31	77	3	87	59	1	0	39	1.05
372136--372187	23	2.3	23	79	0	59	59	0	0	40	0.97
372130--372211	21	3.8	23	68	14	75	59	1	0	39	1.05
372266--372310	22	2.1	21	87	4	63	64	0	0	35	0.94
373621--373683	22	3.0	21	81	6	74	52	0	0	47	1.00
373738--373767	2	15.5	2	93	6	53	46	0	0	53	1.00
373991--374022	16	2.1	15	94	5	55	78	0	0	21	0.76
374629--374653	3	8.3	3	100	0	50	32	0	0	68	0.90
374843--374970	5	26.2	5	67	21	67	40	0	0	58	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374866--374947	9	9.7	9	69	21	52	40	0	0	59	0.97
374843--374981	31	4.3	33	72	18	114	41	0	1	57	1.07
374863--374957	50	1.9	50	83	12	124	41	0	0	58	0.98
374913--374979	28	2.4	27	82	9	80	38	0	1	59	1.06
374848--374980	70	1.9	70	83	13	175	40	0	1	57	1.08
375417--375441	11	2.3	11	100	0	50	60	0	0	40	0.97
380460--380502	12	3.6	12	75	12	52	51	0	0	48	1.00
380450--380507	24	2.5	24	91	2	91	46	0	0	53	1.00
380450--380518	24	3.1	23	84	13	83	47	0	0	52	1.00
380516--380872	183	2.0	183	87	3	522	53	7	2	36	1.43
380557--380953	183	2.1	185	78	9	414	54	6	2	36	1.42
380923--380955	15	2.1	16	88	5	50	60	3	0	36	1.12
381357--381422	35	1.9	33	82	11	80	56	0	3	40	1.15
381405--381473	26	2.7	26	75	6	70	43	0	1	55	1.08
381723--381757	18	1.9	18	88	0	52	40	0	2	57	1.14
383524--383575	22	2.4	22	87	6	70	44	3	0	51	1.19
383657--383714	15	3.8	16	75	11	59	62	0	3	34	1.12
383695--383749	20	2.6	21	77	5	58	70	1	0	27	0.97
383759--383803	18	2.6	16	78	21	54	48	0	6	44	1.29
383765--383801	18	1.9	18	89	10	56	54	0	8	37	1.30
384342--384409	24	2.8	24	84	4	91	55	2	1	39	1.24
384721--384761	21	2.0	21	90	9	66	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384749--384818	19	3.9	17	77	19	63	58	1	0	40	1.07
385247--385289	20	2.2	20	86	0	59	55	0	0	44	0.99
385279--385308	14	2.1	14	93	0	51	73	0	0	26	0.84
386227--386312	27	3.2	26	81	15	88	51	0	0	48	1.00
386916--387103	92	2.0	92	100	0	376	14	19	16	49	1.80
396923--397008	28	3.1	28	68	15	72	36	3	1	59	1.22
399448--399492	3	15.0	3	100	0	90	66	0	0	33	0.92
399572--399607	17	2.1	18	89	5	56	55	2	5	36	1.38
402431--402475	4	11.0	4	81	13	56	73	0	0	26	0.84
402425--402475	25	2.0	25	85	14	70	70	0	0	29	0.87
403436--403467	8	3.8	9	88	12	50	78	0	0	21	0.76
405033--405284	33	7.7	33	74	8	192	19	17	32	30	1.95
406239--406303	29	2.2	29	79	17	80	64	0	4	30	1.14
406236--406299	24	2.6	25	81	11	80	65	0	4	29	1.13
406288--406365	32	2.4	33	86	4	104	53	0	1	44	1.08
406312--406367	17	3.4	17	76	14	64	55	0	0	44	0.99
406305--406375	32	2.4	28	79	20	83	53	0	0	46	1.00
410138--410205	27	2.5	27	83	6	84	45	16	7	30	1.74
412098--412143	21	2.1	22	88	4	67	19	28	19	32	1.96
413909--413982	25	2.9	25	80	13	87	50	13	2	33	1.56
415680--415723	21	2.1	21	87	8	63	59	0	0	40	0.98
416296--416349	15	3.1	16	87	12	56	68	1	0	29	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416298--416350	20	2.9	19	86	13	69	69	1	0	28	0.99
420446--420478	2	17.0	2	93	6	59	48	0	0	51	1.00
421589--421855	33	8.1	33	70	1	158	20	17	32	29	1.95
422256--422308	22	2.4	22	81	9	63	41	0	0	58	0.98
423199--423225	7	3.9	7	100	0	54	70	0	0	29	0.88
424539--424568	15	2.0	15	93	0	51	46	16	13	23	1.82
427250--427305	26	2.0	28	83	10	71	48	0	0	51	1.00
427256--427330	36	2.2	33	79	16	80	45	0	0	54	0.99
429782--429807	2	13.0	2	100	0	52	50	0	0	50	1.00
435493--435751	50	5.2	50	88	4	380	30	18	20	29	1.97

Tables:   1   2   3   4   5   6