genome.fa.s426.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold426
Parameters: 2 7 7 80 10 50 1000
Length:  634051

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 702 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
525573--525641	34	2.1	33	83	8	86	55	0	1	43	1.08
525730--525794	30	2.1	32	83	11	82	46	3	1	49	1.27
537209--537316	43	2.6	41	80	12	121	46	0	0	52	1.06
537652--537713	20	3.2	20	73	21	60	58	1	0	40	1.08
537863--537896	14	2.5	14	85	4	52	58	2	0	38	1.13
542498--542551	25	2.2	25	96	0	99	35	12	12	38	1.82
548893--548921	13	2.1	14	93	6	51	37	3	0	58	1.15
549686--549710	13	1.9	13	100	0	50	36	0	8	56	1.29
550584--550644	7	8.1	7	80	20	70	16	1	3	78	0.96
550583--550644	15	4.1	15	79	10	72	16	1	3	79	0.95
550576--550644	23	3.0	24	77	14	81	17	1	2	78	0.95
550584--550645	32	2.0	31	87	9	90	17	1	3	77	0.98
550583--550626	8	5.6	8	78	5	54	15	0	2	81	0.78
550757--550803	15	3.1	15	82	11	51	44	2	0	53	1.12
551824--551896	19	3.9	19	73	20	57	60	1	0	38	1.06
559538--559585	19	2.4	20	82	10	62	47	0	0	52	1.00
559925--559950	10	2.6	10	100	0	52	53	0	0	46	1.00
560294--560349	13	4.2	13	77	6	51	66	0	1	32	1.03
560378--560430	19	3.0	19	65	18	51	45	3	11	39	1.58
561401--561438	3	12.7	3	100	0	76	34	0	0	65	0.93
561499--561557	3	19.7	3	100	0	118	33	0	0	66	0.92
562621--562658	18	2.2	18	95	4	69	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
562712--562747	2	18.0	2	94	0	63	50	2	0	47	1.15
563707--563752	16	2.9	16	83	0	56	36	2	2	58	1.22
564255--564311	16	3.5	15	72	13	51	29	1	8	59	1.38
565392--565437	22	2.1	21	84	11	58	45	0	0	54	0.99
567166--567227	21	3.1	21	72	9	58	45	3	8	43	1.49
568033--568067	3	11.0	3	88	11	52	31	0	0	68	0.90
568033--568065	7	5.0	7	92	7	52	30	0	0	69	0.88
568280--568324	23	1.9	24	90	4	74	55	0	2	42	1.12
568291--568362	33	2.2	33	85	5	92	54	2	2	40	1.29
568939--568969	16	1.9	16	93	0	53	35	0	9	54	1.33
569152--569193	17	2.6	17	85	7	52	45	4	7	42	1.52
570022--570047	10	2.6	10	100	0	52	50	7	0	42	1.31
570539--570612	24	3.2	24	76	14	75	52	0	1	45	1.09
570566--570626	19	3.3	18	75	18	63	55	0	0	44	0.99
570593--570623	16	1.9	16	93	0	53	48	0	0	51	1.00
575952--576004	22	2.3	24	75	18	58	45	0	0	54	0.99
580708--580752	16	2.8	16	82	0	54	44	0	0	55	0.99
583306--583364	27	2.0	27	84	12	73	50	0	0	49	1.00
585056--585105	25	2.0	24	84	3	64	68	0	8	24	1.16
585807--585838	17	1.9	16	93	6	55	62	3	0	34	1.11
586382--586414	13	2.5	13	90	9	50	54	0	0	45	0.99
586368--586445	29	2.7	29	83	2	84	46	2	1	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587411--587474	29	2.2	29	91	0	101	50	0	1	48	1.10
587414--587471	13	4.1	14	79	14	66	48	0	1	50	1.11
587652--587692	16	2.6	15	85	11	55	51	2	0	46	1.14
587979--588020	18	2.3	19	84	8	52	30	0	4	64	1.14
599024--599048	2	12.5	2	100	0	50	48	0	0	52	1.00
599355--599410	2	28.5	2	77	10	53	53	1	0	44	1.11
599684--599727	17	2.6	17	82	13	63	47	2	6	43	1.42
599743--599800	20	3.0	20	76	19	61	63	0	0	36	0.94
599743--599800	18	3.2	19	80	11	68	63	0	0	36	0.94
600409--600561	21	7.3	21	69	10	80	47	6	8	37	1.60
600531--600628	42	2.3	40	79	10	90	48	6	3	41	1.43
600598--600687	21	4.3	21	81	5	92	58	4	4	32	1.38
600609--600663	9	5.3	10	74	22	51	58	5	1	34	1.32
600537--600677	72	2.0	72	80	2	158	53	5	2	37	1.39
600506--600677	93	1.8	93	82	0	218	53	5	4	36	1.44
601054--601108	29	1.9	29	85	10	78	40	0	0	60	0.97
601316--601386	27	2.6	29	84	10	96	60	4	0	35	1.16
601334--601376	17	2.5	17	84	0	59	60	2	0	37	1.10
601334--601387	15	3.4	16	75	10	58	59	1	0	38	1.08
601879--601905	2	13.5	2	100	0	54	48	0	0	51	1.00
604174--604218	19	2.3	21	75	21	53	55	0	6	37	1.26
605067--605133	32	2.2	32	81	5	84	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
605369--605425	30	1.9	30	86	13	82	68	0	0	31	0.90
605376--605444	23	3.1	21	78	13	68	68	0	1	30	0.99
605376--605444	21	3.1	22	82	10	79	68	0	1	30	0.99
605378--605442	11	5.9	12	74	18	70	66	0	1	32	1.01
605408--605466	24	2.6	23	78	10	59	62	3	5	28	1.32
605362--605483	63	1.9	64	80	11	144	62	1	3	32	1.21
605950--605988	10	3.9	10	82	0	51	53	7	5	33	1.51
605962--605996	2	17.5	2	90	0	52	51	2	2	42	1.31
605952--605996	20	2.2	20	96	0	81	53	4	4	37	1.41
605964--605998	18	1.9	18	100	0	70	51	2	5	40	1.40
606967--607009	22	2.0	22	90	9	70	39	0	0	60	0.97
607378--607508	68	1.9	69	92	1	219	48	16	5	29	1.68
608922--608961	15	2.7	15	80	0	53	52	0	0	47	1.00
608922--608968	7	6.6	7	78	11	51	53	0	0	46	1.00
609745--609771	14	1.9	14	100	0	54	59	3	0	37	1.15
610998--611072	21	3.5	21	74	16	73	41	0	4	54	1.19
611990--612040	8	6.9	8	77	22	58	78	0	0	21	0.75
611990--612039	9	5.6	9	78	21	52	80	0	0	20	0.72
612000--612038	7	5.7	7	82	17	55	79	0	0	20	0.73
611990--612031	20	2.0	21	95	4	77	80	0	0	19	0.70
612161--612199	18	2.2	17	86	4	51	74	0	0	25	0.82
612661--612708	17	2.8	17	81	9	62	20	2	0	77	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613014--613063	16	3.2	16	76	18	61	34	0	2	64	1.05
615434--615458	13	1.9	13	100	0	50	76	0	0	24	0.80
615368--615724	134	2.8	130	86	7	478	54	1	3	40	1.28
616000--616091	35	2.5	36	77	15	98	46	2	6	44	1.41
616452--616893	92	4.9	93	75	11	302	44	6	14	34	1.72
616450--616890	88	4.9	88	76	8	363	43	6	14	34	1.73
616821--616958	72	1.9	70	88	2	204	44	10	15	28	1.79
616893--617317	86	4.8	91	85	5	480	42	8	16	32	1.78
616893--617317	183	2.4	177	82	6	493	42	8	16	32	1.78
621206--621496	112	2.7	111	85	8	388	42	2	2	52	1.27
622057--622083	12	2.2	12	100	0	54	44	0	14	40	1.46
624077--624125	21	2.3	22	79	13	57	53	2	0	44	1.12
624502--624537	18	2.0	18	94	0	63	47	5	2	44	1.41
625083--625111	2	14.5	2	100	0	58	48	0	0	51	1.00

Tables:   1   2   3   4   5   6

The End!