Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold43
Parameters: 2 7 7 80 10 50 1000
Length:  2559314

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  19  of  19  ( 2200 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2443356--2443394
7
5.2
8
90
9
57
0
7
0
92
0.39
2443356--2443399
15
3.1
14
90
9
63
0
6
2
90
0.51
2444547--2444571
1
25.0
1
100
0
50
100
0
0
0
0.00
2445173--2445221
24
2.0
24
96
0
89
40
8
2
48
1.44
2445736--2445778
2
21.5
2
100
0
86
51
0
0
48
1.00
2447220--2447256
2
18.5
2
94
0
65
45
0
2
51
1.15
2447950--2447995
24
1.9
24
82
8
58
32
2
2
63
1.19
2454378--2454405
6
4.7
6
100
0
56
0
35
14
50
1.43
2459619--2459650
2
16.0
2
100
0
64
50
0
0
50
1.00
2465934--2465965
2
16.0
2
100
0
64
50
0
50
0
1.00
2471372--2471412
3
13.7
3
100
0
82
34
0
0
65
0.93
2471828--2471852
12
2.1
12
100
0
50
36
8
16
40
1.77
2473570--2473595
4
6.5
4
100
0
52
23
26
23
26
2.00
2477578--2477610
3
11.0
3
100
0
66
33
0
0
66
0.92
2484426--2484472
16
2.9
15
75
25
51
46
0
4
48
1.21
2484426--2484502
34
2.3
33
82
8
84
53
0
2
44
1.14
2484467--2484508
20
2.0
21
90
4
68
59
0
0
40
0.97
2484524--2484578
17
3.1
17
82
14
74
60
0
0
40
0.97
2484527--2484572
20
2.3
21
78
14
62
60
0
0
39
0.97
2484463--2484578
37
3.4
36
77
12
111
58
0
1
39
1.08
2484528--2484637
53
2.1
51
80
9
125
61
0
0
37
1.02
2484701--2484775
24
3.0
24
84
11
80
50
4
0
45
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2485761--2485831
22
3.1
22
76
15
74
54
0
1
43
1.08
2485756--2485824
28
2.2
33
80
12
85
56
0
1
42
1.08
2485772--2485830
23
2.5
24
81
15
79
55
0
1
42
1.09
2502312--2502392
31
2.6
31
90
0
117
39
14
9
35
1.80
2503220--2503296
31
2.5
31
89
0
109
48
10
2
38
1.51
2504995--2505043
2
24.5
2
100
0
98
51
0
0
48
1.00
2508913--2508957
3
15.0
3
100
0
90
66
0
0
33
0.92
2512988--2513012
5
5.0
5
100
0
50
20
0
0
80
0.72
2513422--2513450
11
2.6
11
100
0
58
65
0
0
34
0.93
2513421--2513453
11
2.8
12
86
13
50
66
0
0
33
0.92
2514804--2514832
3
9.7
3
100
0
58
34
0
0
65
0.93
2532949--2533008
24
2.5
24
83
5
68
61
5
5
28
1.38
2534928--2534977
1
50.0
1
83
0
64
0
6
2
92
0.47
2534928--2534978
11
4.8
11
90
7
79
0
7
1
90
0.53
2540322--2540470
1
149.0
1
78
0
136
0
6
6
87
0.65
2540323--2540471
59
2.5
61
91
4
239
0
6
6
87
0.68
2551825--2551884
24
2.5
24
83
5
68
61
5
5
28
1.38
2555964--2556025
26
2.4
26
75
0
70
38
8
12
40
1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19

The End!