genome.fa.s439.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold439
Parameters: 2 7 7 80 10 50 1000
Length:  1094049

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 799 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951907--951948	21	2.0	21	85	0	57	42	4	28	23	1.74
952390--952447	21	2.8	21	84	2	73	65	0	17	17	1.27
953820--953857	13	2.9	13	92	0	67	34	15	13	36	1.87
958664--958722	30	1.9	30	82	6	73	27	18	23	30	1.98
958680--959448	28	26.8	29	82	7	833	23	16	29	30	1.96
958680--959448	57	13.4	57	81	7	787	23	16	29	30	1.96
958680--959454	171	4.5	171	83	6	872	23	16	29	30	1.96
959006--959084	38	2.1	39	90	2	124	21	13	32	31	1.93
959658--959708	26	2.0	26	84	0	66	31	9	23	35	1.87
960690--960788	1	99.0	1	75	0	63	0	4	11	84	0.74
960706--960773	22	3.2	22	81	12	97	0	4	10	85	0.73
960690--960773	41	2.1	41	91	8	138	0	3	11	84	0.74
960690--960788	17	5.8	16	76	14	83	0	4	11	84	0.74
963446--963478	10	3.4	10	91	4	50	0	12	0	87	0.53
963446--963488	9	4.7	9	82	5	50	2	11	2	83	0.83
963446--963487	19	2.2	19	86	0	57	2	9	2	85	0.77
964554--964618	32	2.0	33	87	3	96	29	13	16	40	1.88
964724--964759	13	2.8	13	91	0	54	33	13	16	36	1.89
966667--966727	16	3.8	17	82	4	58	37	34	21	6	1.79
966698--966740	16	2.7	16	85	0	59	44	32	13	9	1.76
966799--966829	2	15.5	2	100	0	62	48	0	0	51	1.00
966961--967025	2	33.5	2	87	6	89	46	0	3	50	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
968460--968490	16	2.0	15	93	6	53	54	0	0	45	0.99
973887--973941	20	2.8	20	82	0	83	25	10	14	49	1.76
976282--976541	79	3.3	78	79	5	267	28	24	13	34	1.92
989209--989569	79	4.6	79	83	5	435	29	24	13	32	1.93
989216--989569	158	2.2	157	87	4	489	29	25	13	32	1.93
989216--989630	158	2.6	158	83	3	478	27	26	14	31	1.95
989209--989624	79	5.3	79	80	5	412	27	25	14	32	1.94
989209--989659	237	1.9	237	81	4	552	27	25	13	33	1.93
997328--997354	3	9.0	3	100	0	54	33	0	0	66	0.92
998126--998163	16	2.4	17	82	13	53	71	0	0	28	0.87
998492--998533	16	2.6	16	84	3	57	59	0	0	40	0.97
999116--999230	35	3.3	35	91	3	178	20	7	4	66	1.34
999602--999626	6	4.2	6	100	0	50	84	0	0	16	0.63
1004216--1004482	146	1.8	147	85	0	383	47	11	7	33	1.69
1004477--1004523	19	2.4	19	76	20	51	48	4	8	38	1.53
1008900--1008929	14	2.1	14	100	0	60	73	13	6	6	1.24
1009604--1009638	2	17.5	2	100	0	70	48	0	0	51	1.00
1009889--1009928	20	1.9	20	90	10	62	65	0	0	35	0.93
1011403--1011470	16	4.3	16	75	3	66	26	10	14	48	1.76
1011429--1011492	16	4.1	16	68	11	51	29	10	12	46	1.76
1011409--1011507	47	2.1	47	83	7	121	30	11	13	45	1.78
1029802--1029827	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1029784--1029847	32	2.0	33	90	3	103	39	18	14	28	1.90
1032028--1032072	21	2.1	21	84	8	56	53	4	20	22	1.63
1033034--1033059	13	2.0	13	100	0	52	30	15	15	38	1.88
1033180--1033225	21	2.2	20	81	11	58	32	19	4	43	1.71
1035484--1035539	20	2.8	19	89	5	76	39	14	16	30	1.88
1035598--1035623	13	2.0	13	100	0	52	38	15	15	30	1.88
1035580--1035643	32	2.0	33	90	3	103	39	18	14	28	1.90
1036878--1036948	20	3.5	20	90	1	106	29	19	8	42	1.81
1040555--1040703	52	2.9	51	89	4	235	30	17	18	32	1.94
1040692--1040716	13	1.9	13	100	0	50	36	16	16	32	1.90
1040757--1040823	33	2.0	33	88	0	98	40	14	11	32	1.83
1040779--1040803	13	1.9	13	100	0	50	32	16	16	36	1.90
1045317--1045413	47	2.1	47	86	7	135	39	6	9	45	1.61
1047938--1047984	17	2.8	17	78	12	60	51	8	0	40	1.33
1049604--1049643	20	2.0	20	95	0	71	55	12	10	22	1.67
1050303--1050397	48	2.0	48	97	0	181	42	24	6	27	1.78
1051131--1051196	2	35.0	2	79	11	68	46	0	6	46	1.27
1051133--1051194	24	2.6	24	100	0	124	46	0	6	46	1.28
1051297--1051342	22	2.1	22	84	8	58	58	2	0	39	1.10
1052790--1052814	7	3.6	7	100	0	50	76	0	0	24	0.80
1053281--1053340	24	2.4	25	91	5	95	73	1	8	16	1.16
1053984--1054017	13	2.6	13	100	0	68	44	5	41	8	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1054092--1054184	27	3.6	26	80	8	100	46	20	5	27	1.72
1058574--1058607	13	2.6	13	100	0	68	26	5	50	17	1.69
1058687--1058757	27	2.6	27	90	0	106	46	21	5	26	1.73
1067419--1067471	27	1.9	28	84	3	72	62	1	0	35	1.06
1067697--1067725	14	2.1	14	93	6	51	34	6	0	58	1.25
1069007--1069107	51	2.0	50	98	1	193	35	19	9	34	1.85
1070427--1070468	10	4.3	10	82	14	52	78	2	0	19	0.86
1070450--1070497	21	2.3	20	80	13	53	66	4	0	29	1.10
1070484--1070513	13	2.3	13	94	0	51	53	3	3	40	1.34
1075373--1075409	1	37.0	1	94	0	56	5	94	0	0	0.30
1077003--1077046	19	2.2	20	80	15	56	34	4	0	61	1.16
1078497--1078534	6	6.5	6	81	6	51	78	5	15	0	0.91
1084211--1084242	15	2.0	17	88	11	50	46	3	0	50	1.17

Tables:   1   2   3   4   5   6   7

The End!