genome.fa.s451.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold451
Parameters: 2 7 7 80 10 50 1000
Length:  596512

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231507--231550	13	3.5	12	84	9	52	43	0	0	56	0.99
233000--233026	3	9.0	3	100	0	54	33	0	0	66	0.92
233259--233297	19	2.1	19	85	9	53	56	0	2	41	1.13
233381--233422	19	2.1	19	86	8	57	28	0	2	69	1.01
233792--233847	2	28.0	2	96	0	103	48	0	1	50	1.11
238030--238091	11	5.8	11	73	17	51	80	1	17	0	0.79
238033--238091	24	2.7	21	80	14	73	81	1	16	0	0.78
238870--238921	14	3.4	14	71	19	50	42	1	0	55	1.10
238887--238936	20	2.5	22	78	18	63	38	4	2	56	1.30
238886--238934	18	2.5	19	83	9	55	40	4	2	53	1.32
239038--239132	13	6.7	15	70	24	55	43	1	0	55	1.06
239038--239112	27	2.7	27	75	17	73	41	1	0	57	1.07
239521--239586	29	2.2	30	81	7	73	36	0	4	59	1.18
247113--247227	32	3.7	32	77	2	117	39	5	5	50	1.47
247887--247918	13	2.6	12	95	5	55	90	0	6	3	0.53
247885--247918	14	2.5	13	86	9	50	91	0	5	2	0.51
248285--248320	17	2.1	17	100	0	72	47	5	5	41	1.50
250948--251015	24	2.8	24	78	14	68	42	1	1	54	1.18
251258--251390	68	2.0	68	96	0	248	42	4	12	41	1.62
265630--266048	59	7.1	59	83	0	444	20	16	26	36	1.94
265630--266048	118	3.6	118	84	0	491	20	16	26	36	1.94
270738--270768	13	2.4	13	100	0	62	16	16	12	54	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276540--276573	15	2.3	15	94	0	59	85	0	0	14	0.60
277195--277225	16	2.0	15	93	6	53	77	3	0	19	0.90
289890--291193	42	31.0	42	80	4	1205	15	30	18	35	1.92
291708--291741	17	2.0	17	88	0	50	70	5	5	17	1.28
292864--292892	14	2.1	14	100	0	58	79	0	6	13	0.93
292866--292901	14	2.6	14	90	0	54	83	0	5	11	0.80
296398--296448	14	3.4	14	78	21	50	58	1	0	39	1.09
296475--296505	13	2.5	12	90	10	53	32	0	0	67	0.91
297163--297192	2	15.0	2	100	0	60	50	0	50	0	1.00
302389--302413	2	12.5	2	100	0	50	48	0	0	52	1.00
303879--304147	138	2.0	137	87	0	394	32	12	17	37	1.86
306444--306493	24	2.1	24	82	14	59	54	0	2	44	1.11
309138--309163	13	2.0	13	100	0	52	38	38	7	15	1.76
309909--310081	54	3.2	54	72	4	143	17	32	28	21	1.96
310672--310706	11	3.0	11	91	8	52	62	0	0	37	0.95
310685--310737	28	1.9	27	85	11	72	52	0	0	47	1.00
312654--312690	18	2.1	18	95	5	67	13	0	10	75	1.04
313268--313308	21	2.0	21	85	9	57	39	0	7	53	1.29
313255--313317	21	3.2	21	68	20	55	42	0	6	50	1.27
313422--313716	155	1.9	157	92	1	495	57	4	3	34	1.35
313689--313726	19	2.0	20	89	5	60	84	5	0	10	0.77
321142--321184	21	2.0	21	100	0	86	13	18	9	58	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321630--321661	2	16.0	2	100	0	64	50	0	0	50	1.00
321661--321698	2	19.0	2	88	0	58	2	0	50	47	1.15
324899--324954	16	3.6	16	81	11	62	41	0	0	58	0.98
328869--328907	19	2.1	19	85	0	51	30	15	12	41	1.85
331228--331296	18	3.9	18	76	19	74	53	1	1	43	1.18
333433--334087	328	2.0	331	92	2	1091	37	21	9	31	1.85
338316--338343	2	14.0	2	100	0	56	50	0	0	50	1.00
338625--338655	15	2.1	15	93	0	53	51	0	0	48	1.00
339014--339071	30	2.0	30	86	3	82	39	0	3	56	1.16
339021--339070	23	2.1	25	81	7	59	38	0	4	58	1.17
339552--339580	4	7.2	4	100	0	58	75	0	0	24	0.80
340490--340541	21	2.5	22	81	9	63	53	0	3	42	1.19
340888--340933	24	2.0	24	91	4	76	50	0	0	50	1.00
342841--342923	25	3.2	26	73	20	68	57	3	0	38	1.16
347647--347689	16	2.6	16	81	7	50	55	2	2	39	1.25
349212--349338	62	2.0	63	96	1	238	55	12	7	24	1.61
353977--354021	12	3.5	12	82	11	54	75	0	2	22	0.91
354391--354476	40	2.4	32	72	26	82	36	1	3	59	1.22
355011--355042	17	1.9	17	93	6	57	43	0	0	56	0.99
358040--358118	32	2.5	32	76	12	81	31	5	6	56	1.46
358041--358200	80	2.0	80	96	2	295	30	5	7	56	1.48
358104--358134	16	1.9	16	93	0	53	25	0	3	70	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358282--358318	14	2.4	16	82	8	51	29	0	2	67	1.04
366820--366879	20	3.0	21	73	9	70	38	11	13	36	1.81
369330--369468	74	1.9	75	87	4	210	33	16	6	43	1.73
369332--369493	74	2.2	75	80	4	193	33	17	5	42	1.73
372956--372999	23	1.9	23	90	0	70	29	0	22	47	1.51
374139--374200	3	20.7	3	93	0	106	37	0	30	32	1.58
374320--374361	20	2.1	20	100	0	84	40	9	16	33	1.81
380637--380703	34	1.9	35	90	3	109	41	2	26	28	1.70
380717--380743	13	2.1	13	100	0	54	33	0	14	51	1.43
386896--386932	19	1.9	19	100	0	74	86	0	2	10	0.67
386934--386990	21	2.7	21	97	0	105	33	10	19	36	1.86
387046--387113	19	3.9	19	78	21	85	35	11	14	38	1.83
387067--387091	13	1.9	13	100	0	50	36	16	16	32	1.90
387048--387110	32	2.0	32	96	0	117	34	12	15	36	1.86
387153--387178	13	2.0	13	100	0	52	30	15	15	38	1.88
387133--387199	33	2.0	33	88	0	98	25	14	16	43	1.86
389651--389723	27	2.7	27	87	6	94	23	34	21	20	1.97
389706--389877	51	3.3	51	78	5	191	29	26	11	32	1.91
389860--389941	28	2.9	28	80	7	87	24	30	17	28	1.97
395415--395570	80	1.9	82	80	5	183	35	12	22	29	1.90
395604--395828	78	2.9	78	77	9	206	34	13	25	26	1.93
396139--396420	152	1.9	152	96	0	528	41	13	17	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398312--398447	51	2.7	51	88	0	191	44	13	13	27	1.82
399108--399178	19	4.0	16	79	16	70	83	4	2	9	0.89
399117--399177	8	7.4	8	78	12	61	83	3	3	9	0.87
399108--399178	8	7.8	9	73	19	58	83	4	2	9	0.89
400365--400406	13	3.3	13	86	3	59	33	14	16	35	1.89
400365--400413	13	3.8	13	83	5	55	34	14	16	34	1.89
400634--401026	32	12.0	32	73	8	292	32	27	16	23	1.96
400744--401026	64	4.4	64	83	0	323	32	28	17	21	1.96
401170--401374	108	1.9	105	81	8	245	25	20	14	40	1.90
401299--401476	53	3.4	52	84	3	232	21	19	17	41	1.91
401299--401498	105	1.9	106	86	1	285	22	20	17	40	1.92
402250--402300	20	2.5	21	71	9	52	41	11	11	35	1.78
402348--402398	20	2.5	20	90	0	84	33	13	7	45	1.73
403244--403281	20	1.9	20	100	0	76	36	15	15	31	1.90
403832--403897	35	1.9	34	90	3	105	36	10	24	28	1.89
408276--408342	33	2.0	33	88	0	98	40	14	11	32	1.83
408298--408322	13	1.9	13	100	0	50	32	16	16	36	1.90
410435--410494	31	1.9	31	86	0	84	23	16	21	38	1.93
413672--413715	2	22.0	2	100	0	88	50	0	0	50	1.00
415460--415534	12	6.3	12	79	11	66	1	21	0	77	0.85
415460--415534	8	9.5	8	78	11	66	1	21	0	77	0.85
418429--418462	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419150--419407	139	1.8	139	84	5	351	32	13	12	41	1.82
419812--419856	22	2.0	23	91	4	74	44	0	0	55	0.99
420880--420948	26	2.5	30	75	17	78	52	5	0	42	1.25
424211--424260	26	1.9	26	100	0	100	32	24	18	26	1.97
425720--425756	18	2.1	18	100	0	74	24	10	16	48	1.77
427701--427746	22	2.0	23	84	12	60	32	4	13	50	1.61
429820--429860	22	2.0	22	86	13	61	36	2	2	58	1.24
432499--432545	16	2.9	16	76	17	53	44	0	0	55	0.99
432471--432545	32	2.4	31	80	13	73	46	0	0	53	1.00
432484--432566	27	2.9	27	74	17	78	45	1	0	53	1.08

Tables:   1   2   3   4   5