genome.fa.s451.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold451
Parameters: 2 7 7 80 10 50 1000
Length:  596512

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545147--545172	13	2.0	13	100	0	52	38	15	15	30	1.88
545196--545247	13	3.5	13	73	26	50	36	17	13	32	1.89
545204--545266	19	3.7	18	76	24	73	36	17	12	33	1.88
545196--545268	32	2.3	32	97	0	137	35	17	12	34	1.88
546052--546152	42	2.4	42	96	0	184	36	15	24	22	1.94
546136--547094	59	16.4	60	84	9	1127	26	19	27	26	1.99
546133--547091	179	5.5	178	86	6	1240	26	20	27	26	1.99
546128--547086	238	4.1	228	85	8	1163	26	20	26	26	1.99
546947--547029	26	3.1	26	66	16	69	21	20	30	27	1.98
547005--547189	100	1.9	100	89	2	291	28	19	28	23	1.98
548157--548213	14	4.2	13	77	8	60	1	7	7	84	0.85
548167--548213	15	3.3	15	80	11	55	2	4	8	85	0.81
555464--555518	28	2.0	28	100	0	110	18	10	21	49	1.78
555500--555568	24	2.8	24	77	4	66	23	5	26	44	1.75
558096--558141	21	2.1	22	84	4	58	30	19	30	19	1.97
560044--560098	28	2.0	28	100	0	110	18	10	21	49	1.78
560080--560148	24	2.8	24	77	4	66	23	5	26	44	1.75
563880--563927	11	4.4	11	82	17	64	64	0	2	33	1.05
563889--563926	14	2.6	15	76	23	53	65	0	0	34	0.93
563875--563928	27	2.0	29	85	10	78	62	0	1	35	1.06
563878--563923	19	2.4	18	82	7	56	63	0	2	34	1.07
563892--563928	13	2.8	13	88	11	58	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564267--564291	13	1.9	13	100	0	50	36	16	16	32	1.90
564247--564312	32	2.0	33	91	2	107	34	10	18	36	1.85
564366--564514	52	2.9	50	87	6	208	34	18	17	30	1.94
567750--567791	18	2.3	18	84	8	50	47	0	2	50	1.14
567884--567948	26	2.6	25	81	11	71	52	0	1	46	1.10
567886--567927	12	3.3	12	78	21	50	50	0	2	47	1.14
568573--568620	17	2.8	17	75	9	53	27	0	4	68	1.07
568807--568839	17	1.9	17	88	11	50	48	0	3	48	1.17
569125--569186	25	2.5	24	76	7	70	41	0	0	58	0.98
569864--569923	22	2.7	22	81	2	66	33	3	3	60	1.30
570528--570578	18	3.2	18	65	35	53	52	0	0	47	1.00
570519--570578	29	2.1	29	100	0	120	51	0	0	48	1.00
570515--570584	29	2.5	28	91	8	117	54	0	0	45	0.99
571210--571303	26	3.5	26	83	14	111	36	0	1	62	1.02
571228--571303	16	4.1	18	69	23	52	38	0	0	61	0.96
571674--571725	17	3.2	17	84	10	65	63	0	0	36	0.95
571865--571940	32	2.6	29	79	20	88	38	0	1	60	1.05
571887--571940	26	2.0	27	89	7	83	38	0	1	59	1.08
571897--571936	17	2.4	17	79	4	55	37	0	0	62	0.95
572707--572747	21	2.0	21	90	4	66	58	0	0	41	0.98
572707--572756	19	2.6	19	81	12	57	54	0	0	46	1.00
572895--572937	2	21.5	2	100	0	86	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
573886--573954	23	3.0	24	75	10	72	47	0	0	52	1.00
573883--573926	12	3.8	12	84	6	54	52	0	0	47	1.00
574443--574491	9	5.3	9	77	2	53	20	6	0	73	1.04
575595--575620	13	2.0	13	100	0	52	69	0	0	30	0.89
576725--576762	20	1.9	20	94	0	67	36	0	0	63	0.95
576751--576803	23	2.3	23	87	9	74	28	0	5	66	1.15
582161--582195	3	11.7	3	100	0	70	31	0	0	68	0.90
582414--582461	2	24.0	2	95	0	87	50	0	2	47	1.12
584568--584633	22	3.0	22	80	10	82	42	7	10	39	1.68
584953--585127	92	1.9	94	85	4	248	38	1	4	54	1.31
585043--585297	142	1.8	138	82	8	327	43	2	5	49	1.37
585181--585297	51	2.2	53	89	7	186	44	1	2	51	1.25
585603--585657	24	2.2	24	77	3	56	56	5	5	32	1.45
586030--586135	54	2.0	54	88	7	162	56	2	1	38	1.25
586298--586333	19	1.9	19	94	5	65	63	2	0	33	1.08
586406--586439	2	17.5	2	87	6	52	47	0	2	50	1.16
586461--586579	46	2.6	44	78	11	123	52	2	3	41	1.31
586320--586830	276	1.8	279	80	8	626	48	7	6	37	1.58
586723--586947	52	4.4	52	84	6	280	54	4	2	38	1.34
586749--586944	102	1.9	103	88	7	301	53	4	2	39	1.33
586772--586979	101	2.0	102	80	8	228	54	4	0	39	1.26
587046--587088	22	2.0	22	85	0	59	46	13	0	39	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587359--587413	22	2.5	22	72	0	56	45	3	12	38	1.60
587473--587527	22	2.5	21	82	8	65	45	7	9	38	1.64
587648--587709	22	2.8	22	82	4	63	50	6	6	37	1.54
587998--588036	12	3.0	13	85	11	53	41	0	2	56	1.13
587998--588035	14	2.5	16	91	8	62	42	0	2	55	1.14
589135--589324	78	2.4	77	80	5	193	31	17	26	23	1.97
591774--591799	13	2.0	13	100	0	52	38	15	15	30	1.88
591753--591819	33	2.0	33	88	0	98	43	16	14	25	1.86
591863--591887	13	1.9	13	100	0	50	32	16	16	36	1.90
591842--591906	32	2.0	34	93	6	116	36	15	12	35	1.85
591965--591991	14	1.9	14	100	0	54	40	14	14	29	1.86
593609--593648	21	1.9	21	84	0	53	42	5	20	32	1.73
594774--594831	21	2.7	21	81	7	73	37	25	3	32	1.73

Tables:   1   2   3   4   5

The End!