genome.fa.s451.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold451
Parameters: 2 7 7 80 10 50 1000
Length:  596512

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432502--432550	16	3.1	16	73	26	50	44	0	0	55	0.99
432502--432559	18	3.4	18	71	26	54	44	1	0	53	1.10
432502--432569	32	2.1	32	89	5	102	42	1	0	55	1.08
432693--432729	2	18.5	2	100	0	74	51	0	0	48	1.00
433046--433074	2	14.5	2	100	0	58	51	0	0	48	1.00
433613--433666	22	2.5	21	82	8	56	53	7	0	38	1.29
433633--433682	21	2.5	20	86	3	64	60	2	0	38	1.09
439576--439649	23	3.2	23	68	12	62	54	0	0	45	1.00
439970--439999	2	15.0	2	100	0	60	50	0	0	50	1.00
440200--440225	11	2.4	11	100	0	52	15	0	0	84	0.62
441761--441820	31	1.9	31	86	6	86	65	1	0	33	1.03
441791--441825	18	1.9	18	88	11	54	65	0	0	34	0.93
447770--447843	18	4.3	17	78	13	55	39	0	0	60	0.97
447914--447955	14	3.0	14	76	13	50	19	7	0	73	1.05
448352--448390	19	2.0	20	85	5	53	56	0	0	43	0.99
448736--448773	20	1.9	20	94	0	67	28	0	5	65	1.14
448759--448824	27	2.6	24	73	7	60	34	3	7	54	1.44
448730--449384	73	9.0	73	79	7	625	32	2	11	53	1.51
448730--449382	219	3.0	216	83	6	789	32	2	11	53	1.51
448730--449390	145	4.5	146	79	7	641	32	2	11	53	1.51
453456--453515	20	3.0	20	87	4	86	31	13	18	36	1.89
458268--458367	32	3.1	32	87	5	139	33	11	18	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458266--458362	19	5.8	18	69	27	70	31	11	17	39	1.85
458287--458343	13	3.9	13	74	24	51	35	12	17	35	1.87
458415--458439	13	1.9	13	100	0	50	32	16	20	32	1.94
458448--458576	52	2.5	52	94	0	231	35	17	17	28	1.93
462893--462992	28	3.6	28	83	2	139	29	31	10	30	1.89
462985--463380	32	13.1	32	80	7	343	31	28	18	21	1.97
462973--463837	28	29.2	28	75	11	493	30	27	17	24	1.97
463017--463818	86	9.0	84	75	10	532	30	27	17	24	1.97
463049--463694	58	11.1	57	76	12	328	30	27	17	24	1.97
462973--463833	92	9.7	87	76	10	633	30	27	17	24	1.97
463910--464025	48	2.5	45	81	6	126	24	25	18	32	1.97
464995--465033	19	2.0	20	90	5	62	10	20	46	23	1.81
465809--465833	13	1.9	13	100	0	50	36	16	16	32	1.90
465896--465920	13	1.9	13	100	0	50	32	16	16	36	1.90
471643--471728	1	86.0	1	76	0	82	88	11	0	0	0.52
471644--471728	8	10.9	8	83	14	99	88	11	0	0	0.52
471643--471728	19	4.6	18	81	11	102	88	11	0	0	0.52
471643--471728	14	6.3	14	78	8	97	88	11	0	0	0.52
471644--471728	27	3.3	26	85	8	120	88	11	0	0	0.52
473168--473330	29	5.6	29	80	9	170	31	28	18	22	1.97
473164--473354	57	3.3	57	83	5	206	32	27	17	21	1.96
473162--473380	28	7.6	28	79	10	183	33	28	16	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473496--473581	43	2.0	43	90	0	136	27	25	18	27	1.98
473413--473637	92	2.4	95	85	6	303	25	25	17	32	1.97
473539--473691	51	2.9	53	81	5	193	24	23	15	35	1.94
474529--474553	13	1.9	13	100	0	50	36	16	16	32	1.90
474616--474744	52	2.5	52	96	0	231	34	18	17	29	1.94
480979--481030	12	4.5	11	80	7	50	84	5	9	0	0.77
480979--481031	18	2.8	18	86	11	70	83	7	9	0	0.83
481986--482096	30	3.6	30	81	10	125	24	27	18	28	1.98
481986--482166	31	5.7	32	84	6	174	22	30	16	30	1.95
482142--482191	25	2.0	25	96	0	91	26	40	14	20	1.90
482108--482223	59	1.9	60	84	6	155	24	37	12	26	1.90
482167--482245	36	2.2	36	86	4	117	25	34	10	30	1.89
482233--482332	33	3.0	33	97	0	182	27	33	19	21	1.97
482332--483339	49	20.7	49	86	1	1393	25	26	17	30	1.97
482369--483339	98	9.9	98	97	0	1791	25	26	17	30	1.97
482332--483426	196	5.7	196	94	2	1838	25	26	17	30	1.97
483304--483369	34	1.9	34	87	0	96	31	22	18	27	1.97
483338--483555	67	3.8	55	75	13	201	25	23	14	36	1.93
483338--483473	52	2.6	52	83	3	164	25	23	16	35	1.95
484376--484400	13	1.9	13	100	0	50	36	16	16	32	1.90
484463--484487	13	1.9	13	100	0	50	32	16	16	36	1.90
489883--490020	71	1.9	71	85	2	188	30	2	11	55	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
490015--490070	26	2.2	26	84	6	71	32	0	16	51	1.44
490152--490261	26	4.4	26	63	21	72	28	1	10	59	1.42
490158--490260	25	4.2	25	62	24	65	28	1	11	58	1.44
490139--490244	24	4.3	24	67	25	69	28	1	11	58	1.43
490075--490411	147	2.3	147	84	3	403	29	2	12	56	1.48
490075--490411	74	4.6	73	85	5	394	29	2	12	56	1.48
495710--495769	16	3.8	16	78	22	65	83	6	10	0	0.81
495710--495765	17	3.6	16	76	11	62	83	7	8	0	0.80
495710--495758	10	4.8	10	80	11	55	85	8	6	0	0.73
495710--495769	31	1.9	31	86	6	86	83	6	10	0	0.81
495710--495771	15	3.9	15	76	6	61	83	6	9	0	0.79
495712--495764	26	2.0	28	88	7	83	84	7	7	0	0.76
496710--496862	31	4.9	31	85	8	159	22	30	15	31	1.95
496837--497072	27	8.0	27	72	17	175	20	37	12	28	1.90
496809--497156	121	2.8	122	89	4	536	19	36	12	31	1.89
496809--497156	61	5.6	61	91	3	536	19	36	12	31	1.89
497163--497282	32	3.7	33	87	3	181	29	32	19	19	1.96
497163--497289	65	2.0	62	89	4	191	29	33	18	18	1.95
497328--498219	43	19.1	43	76	15	794	24	27	18	30	1.98
497277--498219	92	10.0	92	83	11	998	24	27	18	30	1.98
497441--497508	21	3.2	21	62	25	52	25	29	17	27	1.97
497457--497527	24	3.2	24	61	19	62	23	28	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497462--497530	22	3.2	22	62	25	56	23	28	17	30	1.97
497281--498228	144	6.7	144	88	7	1053	24	27	18	30	1.98
497282--498155	236	3.7	236	95	1	1514	24	27	18	29	1.98
498989--499040	21	2.5	21	69	12	52	32	17	21	28	1.96
499087--499111	13	1.9	13	100	0	50	36	16	16	32	1.90
499067--499133	33	2.0	33	88	0	98	32	11	14	40	1.83
499174--499198	13	1.9	13	100	0	50	32	16	16	36	1.90
499207--499335	52	2.5	52	93	2	215	33	16	18	31	1.93
505188--505220	2	16.5	2	100	0	66	51	0	0	48	1.00
506372--506414	20	2.0	22	86	8	63	51	9	2	37	1.47
506372--506423	22	2.3	23	83	6	63	50	11	1	36	1.50
506379--506423	20	2.3	20	84	3	56	48	13	2	35	1.54
507567--507605	20	2.0	19	90	5	60	56	0	0	43	0.99
507537--507629	16	5.9	15	70	25	59	56	1	1	40	1.13
507533--507629	48	2.0	48	82	11	119	56	1	1	41	1.13
513511--513537	2	13.5	2	100	0	54	51	48	0	0	1.00
513735--513760	2	13.0	2	100	0	52	50	0	0	50	1.00
520180--520221	15	2.8	15	96	0	75	35	4	7	52	1.50
521781--521850	25	2.8	25	75	12	65	50	4	0	45	1.21
521881--521910	14	2.1	15	93	6	53	50	0	0	50	1.00
521883--521934	24	2.1	25	82	3	61	50	1	1	46	1.23
528678--528734	13	3.9	13	74	24	51	31	15	15	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528692--528755	19	3.7	18	74	23	66	34	17	14	34	1.89
528679--528754	32	2.4	32	93	0	125	32	17	15	34	1.91
531023--531069	18	2.7	18	93	3	78	19	6	6	68	1.34
536170--536366	100	2.0	100	91	0	322	34	12	8	45	1.71
536985--537029	17	2.6	17	76	13	56	35	0	8	55	1.31
542181--542384	79	2.6	79	78	4	207	30	14	27	27	1.95
542398--542616	51	4.3	51	81	7	228	31	10	27	30	1.90
542288--542782	262	1.9	262	91	0	810	30	12	27	28	1.93
542603--542672	28	2.5	27	86	4	86	22	18	35	22	1.95
542681--542783	52	1.9	54	90	3	165	33	10	25	30	1.90

Tables:   1   2   3   4   5