genome.fa.s452.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold452
Parameters: 2 7 7 80 10 50 1000
Length:  589716

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 522 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88486--88529	9	4.9	9	81	10	54	72	0	2	25	0.96
88778--88816	20	2.0	20	85	5	53	58	2	5	33	1.33
89455--89552	40	2.4	43	81	8	116	53	0	0	46	1.00
89874--89921	20	2.3	20	79	10	53	50	0	0	50	1.00
89931--89982	10	5.0	10	77	9	59	44	0	1	53	1.11
94825--94856	3	10.7	3	100	0	64	31	0	34	34	1.58
95975--96037	25	2.6	24	77	7	74	61	0	0	38	0.96
96035--96080	10	5.2	9	85	15	53	52	0	0	47	1.00
96028--96057	15	1.9	16	93	6	53	53	0	0	46	1.00
96048--96086	2	19.5	2	89	10	62	48	0	2	48	1.15
96212--96266	21	2.7	20	76	17	60	43	0	1	54	1.10
98529--98559	14	2.2	14	94	0	53	35	0	0	64	0.94
99811--99845	15	2.3	15	90	0	52	31	5	0	62	1.18
102635--102785	74	2.0	76	92	2	252	29	9	25	34	1.89
102936--102995	19	3.3	18	73	17	54	45	0	0	55	0.99
103715--103742	2	14.0	2	100	0	56	50	0	0	50	1.00
103894--103936	21	2.0	21	100	0	86	32	9	9	48	1.67
105822--105876	2	27.5	2	100	0	110	50	0	0	49	1.00
107128--107171	3	14.7	3	100	0	88	65	0	0	34	0.93
108052--108082	5	6.4	5	92	7	55	80	0	0	19	0.71
108972--109029	8	7.0	9	75	15	54	56	0	3	39	1.16
108972--109031	30	1.9	32	86	6	88	58	0	3	38	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109051--109110	25	2.4	25	81	13	77	56	3	1	38	1.26
111987--112026	14	2.7	15	84	7	55	37	0	0	62	0.95
111987--112044	30	2.0	29	89	3	89	34	0	0	65	0.93
112331--112363	15	2.2	15	89	10	50	63	0	0	36	0.95
112584--112617	3	11.7	3	87	6	52	32	0	2	64	1.08
113224--113282	19	3.0	20	76	18	63	52	0	0	47	1.00
113227--113293	23	3.0	24	82	10	79	55	0	0	44	0.99
113286--113336	14	3.4	14	75	19	57	47	1	0	50	1.12
114458--114490	2	17.0	2	87	6	50	48	0	3	48	1.17
114920--114961	18	2.3	19	80	12	52	50	0	0	50	1.00
116465--116528	28	2.2	29	83	5	85	37	1	0	60	1.06
116526--116560	9	3.8	9	85	7	52	57	2	0	40	1.14
116783--116815	2	16.5	2	100	0	66	48	0	0	51	1.00
121207--121253	15	3.1	15	87	0	58	53	0	0	46	1.00
121207--121252	22	2.1	22	84	8	58	52	0	0	47	1.00
121292--121317	7	3.7	7	100	0	52	76	0	0	23	0.78
121713--121771	14	4.3	14	74	10	59	42	0	1	55	1.09
121706--121771	20	3.3	19	78	18	62	43	0	1	54	1.09
121699--121780	41	2.0	41	83	11	105	42	0	1	56	1.07
121697--121766	22	3.3	22	76	19	76	42	0	1	55	1.08
121755--121812	19	2.8	19	79	10	53	39	0	0	60	0.97
122506--122551	23	2.0	23	83	8	58	69	2	0	28	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122668--122703	3	12.0	3	100	0	72	66	0	0	33	0.92
122706--122738	3	11.3	3	93	6	59	36	0	0	63	0.95
123262--123314	18	2.9	18	71	2	52	56	0	0	43	0.99
123255--123338	42	1.9	42	80	7	96	51	2	1	45	1.22
123666--123695	3	10.0	3	92	0	51	70	0	0	30	0.88
123670--123703	9	3.8	9	88	0	50	73	2	0	23	0.97
123661--123692	15	2.1	15	94	0	55	71	0	0	28	0.86
128251--128291	17	2.4	17	91	0	64	12	24	39	24	1.89
128296--128332	2	18.5	2	100	0	74	51	0	48	0	1.00
128553--128605	26	2.0	26	81	0	61	52	1	1	43	1.23
128607--128642	14	2.6	14	86	4	56	75	0	0	25	0.81
129398--129445	22	2.2	22	88	0	69	62	0	4	33	1.14
134680--134719	6	6.5	6	85	2	53	37	0	10	52	1.35
134680--134719	18	2.2	19	95	4	73	37	0	10	52	1.35
134893--134965	36	2.0	35	84	10	94	47	9	2	39	1.50
136179--136214	15	2.4	15	90	9	56	33	0	0	66	0.92
136296--136342	17	2.8	16	87	6	58	57	4	2	36	1.30
136254--136321	34	1.9	34	82	11	84	36	4	1	57	1.28
136500--136571	16	4.4	16	74	24	62	37	4	1	56	1.27
136657--136688	2	16.0	2	93	0	55	0	50	3	46	1.17
138110--138141	17	1.9	16	93	6	55	50	6	15	28	1.68
144209--144252	19	2.4	19	81	11	56	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144739--144773	17	2.1	17	89	10	54	45	0	8	45	1.34
145439--145478	3	13.3	3	100	0	80	67	0	0	32	0.91
146208--146236	14	2.0	15	93	6	51	41	6	0	51	1.28
146326--146366	7	6.1	7	80	11	50	56	0	0	43	0.99
146312--146365	23	2.2	25	84	15	69	59	0	1	38	1.08
146691--146747	20	3.0	20	75	12	66	26	0	0	73	0.83
146695--146744	10	4.8	11	79	16	54	26	0	0	74	0.83
146685--146777	30	3.0	31	83	9	111	33	0	0	66	0.92
146754--146817	30	2.3	28	82	12	78	32	1	3	62	1.20
146765--146829	30	2.2	30	83	2	78	38	1	3	56	1.24
146817--146894	23	3.4	23	73	3	77	55	3	2	38	1.32
146950--147040	39	2.3	38	80	10	94	57	3	3	36	1.32
147317--147389	26	2.7	28	75	18	82	42	1	0	56	1.08
147328--147372	18	2.6	17	83	13	56	44	0	0	55	0.99
147367--147423	28	2.0	28	83	10	71	29	5	1	63	1.27
147378--147422	23	2.0	23	86	4	65	31	4	2	62	1.27
147418--147455	19	2.0	19	89	0	58	34	0	2	63	1.09
147549--147591	22	2.0	22	86	9	61	62	0	0	37	0.95
147523--147625	54	2.0	53	81	12	124	55	0	0	43	1.06
148992--149052	25	2.6	23	81	5	68	63	1	4	29	1.24
148992--149050	29	2.1	28	84	9	75	64	1	5	28	1.24
149055--149101	16	2.9	17	73	23	55	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149031--149101	32	2.2	32	85	7	90	52	0	1	46	1.09
149036--149106	34	2.1	33	84	7	90	53	0	0	46	1.00
149028--149136	11	10.7	10	68	27	52	51	1	0	45	1.18
149081--149123	21	2.0	22	82	13	54	53	0	0	46	1.00
149294--149395	15	7.1	14	72	15	75	57	0	0	41	1.05
149285--149381	43	2.2	44	79	17	105	56	1	0	42	1.06
149371--149432	16	3.9	15	75	24	56	62	1	1	33	1.14
150460--150514	11	4.8	12	77	18	55	67	0	0	32	0.91
150457--150532	26	3.1	26	73	17	72	67	0	0	32	0.91
150551--150578	11	2.5	11	100	0	56	0	17	0	82	0.68
151054--151114	26	2.3	26	80	8	70	50	0	0	49	1.00
151073--151123	25	2.1	24	88	3	75	50	0	0	49	1.00
151812--151837	2	13.0	2	100	0	52	50	0	0	50	1.00
152340--152367	5	5.6	5	100	0	56	17	0	0	82	0.68
153380--153417	20	2.0	18	90	10	58	63	0	0	36	0.95
153380--153425	18	2.5	19	80	13	53	60	0	0	39	0.97
155611--155661	28	2.0	26	85	14	70	52	0	0	47	1.00
156323--156393	19	4.1	17	74	22	58	60	0	1	38	1.06
156894--156961	22	3.2	20	80	17	75	33	1	2	61	1.20
157498--157523	2	13.0	2	100	0	52	50	0	0	50	1.00
158605--158664	29	2.0	30	87	6	86	51	1	0	46	1.10
158979--159017	14	2.9	14	84	3	53	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158989--159026	14	2.6	15	83	8	51	36	0	0	63	0.95
162986--163016	16	1.9	16	93	0	53	35	0	9	54	1.33
163070--163120	12	4.2	12	75	12	50	49	0	0	50	1.00
163281--163317	2	18.5	2	100	0	74	48	0	0	51	1.00
163516--163572	26	2.2	25	81	6	69	57	0	1	40	1.09
163810--163848	20	2.0	20	85	9	55	38	2	2	56	1.27
164393--164457	29	2.3	29	94	2	114	53	1	0	44	1.09
166495--166585	15	5.9	15	67	28	50	42	1	1	54	1.14
166880--166959	35	2.2	36	84	6	110	48	0	1	50	1.08
168948--169000	18	2.8	19	77	11	65	45	5	9	39	1.60

Tables:   1   2   3   4   5