genome.fa.s452.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold452
Parameters: 2 7 7 80 10 50 1000
Length:  589716

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 522 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
334651--334702	26	2.0	26	96	0	95	40	3	11	44	1.59
336471--336522	14	3.7	15	73	17	58	55	0	0	44	0.99
336461--336534	26	2.8	26	82	6	96	58	0	1	40	1.07
341253--341322	2	36.0	2	88	5	108	51	1	0	47	1.09
341783--341824	16	2.4	18	80	11	61	69	0	0	30	0.89
342799--342898	32	3.0	34	82	12	118	40	3	0	57	1.14
342862--342891	14	2.1	15	93	6	53	33	6	0	60	1.23
349218--349325	21	5.3	18	66	30	58	10	48	1	39	1.48
349221--349339	42	2.8	42	93	0	202	9	46	1	42	1.46
349254--349329	12	6.9	11	75	15	52	9	48	2	39	1.49
353474--353533	30	2.0	30	96	0	111	33	3	8	55	1.47
353671--353715	22	2.0	22	86	0	63	33	2	0	64	1.06
354037--354088	26	2.0	26	85	7	70	50	0	3	46	1.20
354883--354928	24	1.9	25	86	8	69	52	0	0	47	1.00
356025--356123	26	3.6	27	77	15	96	55	1	1	42	1.13
356348--356418	23	3.3	23	79	13	71	54	0	0	45	0.99
356441--356477	16	2.3	17	90	9	60	48	0	0	51	1.00
360262--360304	14	3.1	14	78	21	54	23	2	2	72	1.08
360961--361000	19	2.1	19	100	0	80	27	15	22	35	1.94
362885--362912	2	14.0	2	100	0	56	50	0	0	50	1.00
365485--365521	18	2.1	18	100	0	74	32	5	16	45	1.70
366757--366829	28	2.6	29	78	22	84	58	2	0	38	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366816--366850	7	5.0	7	89	10	54	71	0	0	28	0.86
366816--366850	13	2.5	14	86	13	54	71	0	0	28	0.86
367727--367871	67	2.2	65	93	3	247	42	11	8	38	1.70
368710--368734	6	4.2	6	100	0	50	52	0	0	48	1.00
375672--375718	21	2.2	21	88	7	69	44	10	23	21	1.83
376678--376762	39	2.2	39	89	0	125	49	24	0	25	1.51
376678--376741	21	3.2	21	68	20	55	48	21	0	29	1.51
376688--376749	21	3.1	21	70	13	58	50	20	0	29	1.49
377166--377190	13	1.9	13	100	0	50	60	0	0	40	0.97
378433--378465	3	11.0	3	100	0	66	0	33	0	66	0.92
378892--378926	3	11.7	3	100	0	70	65	0	34	0	0.93
379346--379413	19	3.6	19	76	18	70	39	1	0	58	1.07
379380--379454	24	3.1	24	69	19	75	48	0	0	52	1.00
379346--379494	19	8.0	20	67	18	54	44	0	0	54	1.04
387670--387709	16	2.5	16	88	8	55	42	0	0	57	0.98
388759--389173	207	2.0	207	95	0	751	19	41	15	24	1.89
389745--389787	22	2.0	22	90	4	70	39	2	0	58	1.11
389879--389951	19	3.7	19	72	22	62	63	0	0	36	0.95
389885--389956	20	3.4	23	70	24	68	63	1	0	34	1.03
390690--390729	20	2.0	20	85	9	55	57	2	0	40	1.12
393065--393107	22	2.0	22	95	0	77	18	23	18	39	1.92
396947--397014	33	2.1	33	88	0	100	20	26	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397676--397821	77	1.9	77	90	2	231	21	20	19	38	1.94
399229--399429	101	2.0	99	83	7	248	40	14	4	40	1.67
401140--401173	6	5.7	6	92	0	50	23	32	35	8	1.86
401140--401173	12	2.8	12	90	0	59	23	32	35	8	1.86
401617--401647	2	15.5	2	100	0	62	51	48	0	0	1.00
401647--401681	2	17.5	2	87	0	52	48	2	2	45	1.32
404887--405029	71	2.0	71	98	0	277	30	14	20	34	1.93
410346--410600	129	2.0	128	92	2	431	35	5	10	48	1.61
412391--412435	23	2.0	23	86	8	65	51	4	0	44	1.21
412634--412671	19	2.0	20	89	5	60	52	0	0	47	1.00
413053--413083	2	15.5	2	100	0	62	51	0	48	0	1.00
413881--413905	2	12.5	2	100	0	50	48	0	0	52	1.00
418519--418573	16	3.4	16	85	14	69	80	1	3	14	0.94
419228--419261	2	17.0	2	100	0	68	50	0	0	50	1.00
420324--420357	2	17.0	2	100	0	68	0	50	0	50	1.00
428455--428516	23	2.5	24	76	15	63	62	0	0	37	0.95
429291--429337	21	2.2	21	88	0	67	44	10	23	21	1.83
434153--434189	19	1.9	19	88	0	56	24	8	5	62	1.44
437052--437077	3	8.7	3	100	0	52	34	0	0	65	0.93
444477--444522	14	3.2	14	78	6	56	54	13	13	19	1.71
446321--446434	56	2.0	56	89	3	176	32	19	12	35	1.89
449836--449865	15	2.0	15	100	0	60	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
449834--449866	17	1.9	17	100	0	66	48	0	0	51	1.00
449833--449866	2	17.5	2	93	6	61	50	0	0	50	1.00
450985--451237	50	5.1	50	84	1	337	34	18	17	28	1.94
450985--451237	100	2.5	100	89	0	380	34	18	17	28	1.94
455400--455602	50	4.0	50	82	4	223	34	15	18	31	1.92
466708--466751	3	15.0	3	81	13	56	31	0	2	65	1.05
466715--466751	14	2.6	14	91	4	56	35	0	0	64	0.94
470101--470135	2	17.5	2	100	0	70	0	0	48	51	1.00
471312--471342	4	7.8	4	100	0	62	22	0	0	77	0.77
471457--471482	3	8.7	3	100	0	52	69	0	30	0	0.89
471875--471900	2	13.0	2	100	0	52	50	0	0	50	1.00
475556--475584	13	2.1	14	93	6	51	48	0	0	51	1.00
475928--475956	9	3.0	10	90	10	51	72	0	0	27	0.85
476333--476382	21	2.4	21	83	10	66	58	0	6	36	1.23
476466--476559	23	4.2	22	68	22	63	41	0	2	56	1.11
477714--477787	24	2.7	27	84	14	82	37	0	0	62	0.96
477743--477792	19	2.7	19	82	14	68	40	0	0	60	0.97
478987--479037	26	2.0	26	92	0	84	41	11	9	37	1.75
487785--487833	15	3.2	16	88	11	68	55	12	32	0	1.37
487794--487859	16	4.2	15	83	11	69	60	13	25	0	1.33
487820--487861	22	2.0	21	90	4	66	64	16	19	0	1.30
487799--487861	5	12.0	5	81	6	63	60	15	23	0	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488317--488356	17	2.3	17	86	4	53	70	7	5	17	1.30
494083--494118	2	18.0	2	100	0	72	0	50	0	50	1.00
494960--494993	10	3.4	10	87	0	50	41	0	8	50	1.34
495737--495765	2	14.5	2	100	0	58	51	0	0	48	1.00
503538--503581	2	23.0	2	90	9	74	50	0	0	50	1.00
503538--503593	18	3.4	16	88	9	53	53	0	0	46	1.00
503734--503760	4	6.8	4	100	0	54	25	0	0	74	0.83
504279--504303	3	8.3	3	100	0	50	0	36	0	64	0.94
505961--506044	36	2.3	38	81	6	93	47	0	0	52	1.00
505988--506066	38	2.1	37	81	13	90	49	1	0	49	1.09
506156--506203	15	2.9	17	78	12	55	60	0	2	37	1.09
509752--510221	166	2.8	164	85	7	574	44	12	8	34	1.73
510895--510956	21	3.0	21	71	17	65	32	9	9	48	1.69
511078--511117	21	1.9	21	85	10	55	37	2	10	50	1.50
511482--511556	20	3.8	20	78	0	87	33	13	13	40	1.83
512489--512536	22	2.2	21	82	14	53	27	14	10	47	1.76
516347--516402	26	2.1	27	83	9	71	48	1	0	50	1.11
521390--521499	55	2.0	55	100	0	220	45	20	10	23	1.82
522820--522897	40	1.9	41	97	2	149	51	7	12	28	1.67
523638--523757	58	2.1	58	98	0	231	57	12	10	20	1.63
523913--523951	17	2.3	17	83	12	53	33	5	0	61	1.18
524515--524571	13	3.9	13	72	24	51	35	12	17	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524528--524590	19	3.7	18	76	24	73	33	11	17	38	1.85
524514--524598	32	2.7	32	94	0	152	32	11	17	37	1.86
529332--529371	15	2.5	15	88	8	53	82	17	0	0	0.67
530648--530770	31	4.1	30	81	12	126	24	30	15	29	1.96
530707--531028	34	9.5	34	88	4	418	22	31	11	35	1.89
531016--531214	33	6.0	33	95	0	344	30	31	18	20	1.96
531280--531348	21	3.2	20	67	25	52	27	26	17	28	1.97
531221--531715	135	3.6	135	84	9	660	26	24	17	31	1.97
531260--531715	92	5.0	92	92	2	710	25	25	17	31	1.97
531416--531483	21	3.2	21	63	19	50	27	25	16	30	1.96

Tables:   1   2   3   4   5