Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold452
Parameters: 2 7 7 80 10 50 1000
Length:  589716

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 522 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
531395--531462
22
3.1
22
62
19
52
25
23
19
32
1.97
531409--531474
22
3.0
22
62
33
52
27
22
19
30
1.98
531225--531878
43
13.8
49
78
11
552
25
25
16
32
1.97
531768--531869
52
2.0
52
88
3
152
23
29
15
31
1.95
532701--532764
19
3.7
19
72
23
68
34
10
17
37
1.85
532702--532811
32
3.4
32
85
2
139
35
14
15
34
1.88
532721--532777
13
3.9
13
72
24
51
36
12
15
35
1.85
532787--532811
13
1.9
13
100
0
50
32
16
16
36
1.90
536187--536225
16
2.4
16
86
0
60
30
0
0
69
0.89
536184--536225
11
3.9
11
85
14
61
30
0
0
69
0.89
537918--538043
38
3.3
38
82
0
126
33
27
7
30
1.86
539822--539866
19
2.4
18
82
10
54
57
4
0
37
1.19
540718--540991
113
2.4
115
88
4
387
50
10
15
22
1.75
541054--541096
5
8.4
5
85
14
61
37
0
0
62
0.95
541039--541094
26
2.1
27
80
9
71
42
0
1
55
1.10
541059--541099
21
2.0
21
95
0
73
41
0
0
58
0.98
541049--541105
26
2.2
26
80
0
69
49
0
1
49
1.11
541150--541202
16
3.4
15
75
17
54
56
3
3
35
1.35
541157--541210
16
3.3
16
82
10
65
57
5
1
35
1.33
541131--541211
32
2.6
31
81
13
94
53
7
2
37
1.43
541312--541364
16
3.3
16
75
0
61
56
5
3
33
1.41
541312--541412
32
3.2
30
82
13
114
57
4
2
34
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
541328--541426
16
6.2
16
76
3
94
57
3
2
37
1.26
541625--541690
19
3.3
20
77
10
64
42
0
1
56
1.08
542112--542198
29
3.0
29
85
6
122
25
20
17
36
1.94
544884--544922
20
2.0
20
94
0
69
15
23
30
30
1.95
555088--555128
2
20.5
2
100
0
82
51
0
0
48
1.00
555374--555398
10
2.5
10
100
0
50
40
8
0
52
1.31
558004--558049
24
1.9
25
82
8
60
54
6
6
32
1.52
561541--561588
22
2.1
23
81
11
55
41
2
16
39
1.60
564408--564438
4
7.8
4
100
0
62
51
0
25
22
1.48
573098--573147
13
4.1
13
70
15
52
30
16
16
38
1.90
575277--575806
79
6.7
79
79
2
485
28
24
13
33
1.93
575277--575783
158
3.2
157
82
3
563
28
24
13
33
1.93
580813--581363
158
3.5
158
80
7
586
28
22
12
35
1.91
580815--581414
79
7.6
79
80
5
529
29
23
12
35
1.91
583598--583837
79
3.0
79
100
0
480
28
16
21
32
1.95
585537--585803
79
3.4
79
81
7
299
32
12
27
27
1.92
585747--585855
51
2.1
51
83
6
132
39
11
22
27
1.87
585662--586054
133
3.0
129
76
9
328
36
11
23
28
1.90
588313--588369
20
2.8
20
89
0
78
47
12
17
22
1.81
588789--588819
3
10.3
3
100
0
62
64
0
0
35
0.94

Tables:   1   2   3   4   5

The End!