genome.fa.s485.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold485
Parameters: 2 7 7 80 10 50 1000
Length:  999764

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 928 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90280--90337	22	2.6	22	73	26	59	70	0	0	29	0.87
90588--90629	21	2.0	21	86	9	59	35	0	0	64	0.94
90582--90635	28	1.9	28	82	14	67	40	0	0	59	0.98
91901--91972	23	3.1	25	80	13	91	50	1	0	48	1.09
92039--92077	15	2.4	16	87	8	53	66	0	0	33	0.92
92438--92487	15	3.4	15	77	5	66	30	0	0	70	0.88
93405--93433	14	2.0	15	93	6	51	55	0	0	44	0.99
94685--94764	22	3.9	22	66	25	66	56	0	0	43	0.99
95230--95276	17	2.7	17	73	26	53	51	0	0	48	1.00
95958--96001	20	2.4	19	85	11	56	50	0	2	47	1.13
96132--96202	24	3.0	24	71	6	65	39	0	0	60	0.97
96485--96517	17	2.0	17	94	5	59	42	0	3	54	1.15
96504--96556	22	2.8	18	76	18	54	54	3	1	39	1.29
96486--96568	17	4.5	17	70	22	53	51	2	2	43	1.27
96586--96615	4	7.5	4	92	0	51	0	20	0	80	0.72
98100--98147	17	2.9	16	76	11	51	35	0	2	62	1.07
98532--98569	19	2.0	20	89	5	60	39	2	0	57	1.12
98918--98974	17	3.6	16	73	20	57	45	0	0	54	0.99
101987--102034	26	1.9	24	87	8	69	58	4	0	37	1.18
102108--102145	3	12.3	3	94	5	67	63	0	2	34	1.09
102928--102979	25	2.0	26	88	3	79	36	0	0	63	0.95
102921--102983	27	2.3	26	86	10	83	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104500--104547	24	2.0	24	84	8	62	58	2	0	39	1.10
105220--105325	36	2.8	37	83	8	126	43	0	1	53	1.18
105277--105338	29	2.3	27	82	17	76	46	0	0	53	1.00
105252--105312	18	3.4	18	72	17	63	42	1	1	54	1.20
105286--105358	29	2.5	28	72	16	67	47	0	0	52	1.00
105966--106003	15	2.4	16	83	16	53	47	5	13	34	1.65
107008--107044	16	2.3	16	90	0	56	51	0	0	48	1.00
107033--107057	13	1.9	13	100	0	50	56	4	0	40	1.18
107112--107235	62	2.0	62	96	0	230	43	24	10	21	1.84
107292--107340	7	6.2	8	82	15	50	40	2	0	57	1.10
110304--110347	20	2.2	21	92	8	74	34	0	0	65	0.93
110339--110389	21	2.3	23	80	6	61	49	3	0	47	1.20
110596--110630	8	4.2	8	85	7	52	51	0	0	48	1.00
110596--110640	17	2.6	17	86	10	56	46	0	0	53	1.00
110691--110745	24	2.2	26	78	15	62	56	1	0	41	1.10
111248--111300	22	2.5	22	78	3	54	45	0	0	54	0.99
111493--111535	22	2.0	22	86	9	61	37	0	2	60	1.10
112677--112710	3	11.3	3	100	0	68	64	0	0	35	0.94
115707--115780	28	2.7	28	73	21	75	56	2	0	40	1.13
120087--120136	24	2.0	25	85	11	68	58	0	0	42	0.98
120048--120161	60	1.9	60	82	13	146	59	0	0	40	0.97
120061--120168	31	3.5	31	73	16	100	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120248--120289	7	6.3	7	86	5	52	50	0	0	50	1.00
120832--120876	20	2.2	21	84	7	58	33	2	0	64	1.06
120657--121029	184	2.0	189	84	8	492	34	7	6	52	1.55
121200--121247	20	2.3	22	79	10	57	56	0	0	43	0.99
124107--124145	19	2.1	18	90	4	60	46	2	0	51	1.14
124079--124141	19	3.9	16	76	19	69	41	1	0	57	1.08
125597--125865	136	2.0	134	85	9	370	40	4	7	47	1.53
126095--126140	17	2.7	17	86	6	58	56	0	0	43	0.99
126267--126309	21	2.1	20	83	12	52	55	0	0	44	0.99
126622--126769	60	2.4	62	77	17	155	50	0	2	47	1.12
127638--127683	12	3.9	12	83	13	60	30	2	0	67	1.03
127642--127691	22	2.3	23	75	10	59	34	4	0	62	1.14
128241--128294	16	3.2	16	84	5	63	38	7	0	53	1.29
128674--128704	15	2.1	15	93	0	53	29	0	0	70	0.87
128760--128813	26	2.1	26	82	6	65	51	0	0	48	1.00
130904--130962	25	2.2	26	82	11	75	30	6	1	61	1.32
131656--131702	21	2.3	21	78	10	53	42	4	0	53	1.20
143191--143261	35	2.0	35	100	0	142	26	19	14	39	1.90
146392--146448	22	2.4	22	80	11	60	54	0	0	45	0.99
146381--146450	26	2.7	26	71	15	63	55	0	0	44	0.99
146592--146636	23	2.0	23	86	8	65	48	6	0	44	1.29
146817--146868	3	17.3	3	87	0	77	65	5	0	28	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153716--153768	25	2.1	25	82	10	63	28	0	1	69	0.99
154105--154152	12	3.8	12	74	15	51	60	0	0	39	0.97
155037--155100	2	32.0	2	80	0	74	48	7	1	42	1.41
155129--156090	374	2.6	375	86	2	1331	40	6	7	45	1.58
157186--157226	19	2.2	19	86	0	55	21	0	4	73	1.02
157246--157297	25	2.0	27	82	14	65	51	1	0	46	1.12
157246--157296	14	3.8	13	80	19	52	52	1	0	45	1.12
161334--161372	11	3.6	11	96	3	71	56	0	17	25	1.41
164935--164990	2	28.0	2	96	0	76	50	7	0	42	1.30
166368--166968	205	2.9	206	85	4	781	23	10	23	42	1.84
168673--168756	42	2.0	42	95	0	150	35	14	22	27	1.93
177130--177197	20	3.4	20	88	8	95	50	1	0	48	1.10
181276--181308	11	2.8	12	86	9	50	33	0	0	66	0.92
182085--182117	17	1.9	17	93	0	57	0	33	21	45	1.52
184366--184411	2	23.0	2	100	0	92	50	0	0	50	1.00
185578--185633	20	2.9	19	87	10	71	42	1	1	53	1.21
185581--185639	18	3.2	18	88	9	68	42	1	1	54	1.20
186004--186043	16	2.4	17	88	12	57	32	0	10	57	1.32
186535--186577	21	2.0	22	95	4	79	37	4	9	48	1.56
187252--187303	11	4.8	11	73	4	52	32	1	0	65	1.04
189979--190023	2	22.5	2	90	0	72	53	2	0	44	1.13
190276--190309	14	2.5	13	86	9	50	47	0	2	50	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190277--190306	14	2.1	14	93	0	51	53	0	3	43	1.17
193950--194083	30	4.4	29	74	16	96	40	3	5	50	1.42
194232--194276	16	2.8	16	89	0	63	48	0	2	48	1.13
194345--194386	22	2.0	20	82	17	50	45	2	0	52	1.13
194853--194890	14	2.6	15	79	4	51	63	0	7	28	1.23
198941--198997	11	4.8	12	77	10	55	50	1	0	47	1.11
199666--199720	28	2.0	28	82	13	69	49	1	0	49	1.11
199749--199783	16	2.2	16	89	0	52	37	2	2	57	1.29
200750--200779	14	2.1	14	93	0	51	80	3	3	13	0.97
201413--201518	30	3.5	28	79	13	97	41	3	0	53	1.25
201413--201518	32	3.5	30	79	15	112	41	3	0	53	1.25
201966--202004	21	2.0	21	90	10	64	41	0	0	58	0.98
201923--202011	32	2.8	31	74	17	76	41	2	0	56	1.12
202031--202073	22	1.9	22	90	4	68	55	0	0	44	0.99
202350--202406	21	2.8	19	79	12	60	49	0	3	47	1.18
202349--202405	20	2.7	21	74	17	55	50	0	1	47	1.11
202717--202749	15	2.2	15	89	10	50	48	0	3	48	1.17
202720--202761	13	3.1	13	81	18	50	52	0	2	45	1.13
203738--203777	19	2.1	19	86	9	55	55	0	0	45	0.99
213241--213323	41	2.0	41	90	0	130	44	10	15	28	1.80
215434--215472	20	1.9	21	89	5	62	69	7	2	20	1.26
216138--216167	15	2.0	15	93	0	51	76	0	3	20	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
216975--217024	18	2.8	18	82	8	50	52	0	10	38	1.35
217179--217220	21	2.0	21	90	9	68	52	4	0	42	1.22
217908--217946	15	2.6	16	88	8	55	46	0	5	48	1.24
218324--218379	23	2.5	23	75	16	64	33	0	5	60	1.19
218951--219033	42	2.0	42	92	4	141	48	6	0	45	1.27
218996--219029	17	2.1	16	89	10	52	55	5	0	38	1.24
219110--219149	21	2.0	20	90	5	62	40	0	0	60	0.97
220120--220152	15	2.4	14	85	14	50	75	0	9	15	1.03
220184--220220	18	2.1	18	89	0	56	43	0	0	56	0.99
223076--223115	2	20.0	2	89	0	62	45	0	0	55	0.99

Tables:   1   2   3   4   5   6   7   8