genome.fa.s485.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold485
Parameters: 2 7 7 80 10 50 1000
Length:  999764

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 928 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
922483--922548	19	3.6	17	70	20	53	65	0	0	34	0.93
922730--922763	18	1.9	17	88	5	50	23	0	5	70	1.09
926432--926462	2	15.5	2	100	0	62	0	48	0	51	1.00
928268--928302	15	2.3	15	90	0	52	80	11	8	0	0.92
929349--929387	17	2.3	18	86	8	55	46	0	0	53	1.00
929559--929593	2	17.0	2	94	5	61	48	2	0	48	1.16
929699--929735	15	2.5	15	87	12	51	40	0	0	59	0.97
929945--929985	14	2.9	14	85	0	64	46	0	0	53	1.00
930072--930104	9	3.7	9	88	11	50	60	0	0	39	0.97
930122--930167	21	2.2	20	84	3	56	56	0	0	43	0.99
930073--930218	75	1.9	76	83	9	190	55	0	0	44	0.99
930478--930530	20	2.7	19	80	11	63	62	0	0	37	0.96
934362--934393	13	2.3	15	89	10	50	0	31	0	68	0.90
934362--934402	14	2.9	15	78	14	50	0	31	2	65	1.05
934520--934562	12	3.3	12	76	17	50	18	0	9	72	1.11
934507--934562	27	2.0	28	89	3	87	21	0	10	67	1.20
934560--934607	22	2.1	23	84	3	62	31	2	4	62	1.26
934565--934607	22	2.0	22	90	9	70	32	0	4	62	1.15
934594--934628	17	2.0	18	88	5	54	45	0	2	51	1.16
935111--935138	2	14.0	2	100	0	56	50	0	0	50	1.00
946312--946436	33	3.6	34	73	19	116	40	1	2	56	1.22
948089--948127	20	2.0	20	85	10	53	35	2	0	61	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951119--951185	33	2.0	33	88	0	98	34	11	13	40	1.81
951139--951163	13	1.9	13	100	0	50	36	16	16	32	1.90
951226--951250	13	1.9	13	100	0	50	32	16	16	36	1.90
951259--951386	52	2.5	52	93	3	215	32	18	17	30	1.95
955352--955437	19	4.8	18	72	21	65	36	12	16	34	1.87
955394--955418	13	1.9	13	100	0	50	36	16	16	32	1.90
955375--955450	32	2.4	32	93	0	125	34	13	17	35	1.88
955489--955516	13	2.2	13	100	0	56	28	14	17	39	1.89
955469--955534	33	2.0	33	85	5	89	31	15	13	39	1.86
960249--960349	52	1.9	52	91	0	166	28	16	8	45	1.78
960312--960388	20	3.7	20	81	10	100	31	16	12	38	1.87
965602--965640	18	2.3	17	82	8	53	35	15	7	41	1.76
965989--966032	16	2.9	15	80	6	54	40	2	0	56	1.11
967876--967979	14	7.3	14	67	16	52	38	12	17	31	1.87
967933--967988	28	1.9	30	92	7	98	32	14	21	32	1.93
967876--967988	29	3.9	29	77	2	102	36	12	18	32	1.88
968475--968507	2	17.0	2	93	6	59	48	0	0	51	1.00
969257--969318	20	3.2	19	73	13	63	37	0	0	62	0.95
969268--969333	32	2.0	32	85	11	89	39	0	1	59	1.07
969281--969343	32	2.0	32	87	6	92	41	0	3	55	1.16
969260--969360	41	2.5	38	80	16	107	38	0	1	59	1.09
969281--969359	32	2.5	32	83	8	90	40	0	2	56	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
969348--969396	22	2.2	23	85	3	64	28	2	0	69	1.00
969524--969570	24	1.9	25	86	4	69	55	0	0	44	0.99
969554--969591	10	3.2	12	82	17	53	36	0	0	63	0.95
970702--970765	30	2.2	29	83	8	76	51	3	3	42	1.33
970717--970785	26	2.4	29	81	9	81	50	2	2	43	1.32
970799--970856	25	2.3	26	80	14	68	53	5	1	39	1.33
972225--972298	33	2.1	36	87	7	109	31	1	0	67	0.99
972679--972830	32	5.0	32	70	20	85	50	1	0	48	1.09
972868--972910	23	1.9	23	85	4	61	37	6	2	53	1.41
974448--974644	71	2.7	74	78	14	230	54	9	0	35	1.36
974807--974836	15	1.9	16	93	6	53	53	0	0	46	1.00
975017--975161	76	1.9	73	81	12	168	42	2	1	53	1.21
975271--975317	13	3.5	13	83	13	60	55	0	0	44	0.99
975272--975323	14	3.8	14	76	19	56	53	0	0	46	1.00
975372--975408	2	18.5	2	100	0	74	51	0	0	48	1.00
975528--975561	12	2.7	13	90	9	61	79	0	20	0	0.73
975531--975567	14	2.6	14	86	4	56	83	0	13	2	0.74
976320--976377	16	3.6	15	72	17	53	63	1	0	34	1.04
976344--976385	22	2.0	21	86	13	59	59	2	0	38	1.10
976315--976414	34	2.9	34	82	5	96	57	4	0	39	1.18
976557--976609	15	3.6	15	75	12	56	58	0	1	39	1.09
976852--976921	34	2.1	34	88	0	104	28	21	10	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
977024--977054	3	10.3	3	92	0	53	64	32	3	0	1.09
977915--977961	17	2.7	18	83	12	62	51	4	4	40	1.41
977952--977983	16	1.9	17	93	6	57	34	0	0	65	0.93
977949--977991	17	2.5	17	85	7	61	41	0	0	58	0.98
982685--982724	16	2.5	16	95	0	71	37	7	5	50	1.53
982760--982996	50	4.8	50	90	1	359	30	18	22	29	1.97
982760--982996	99	2.4	100	90	0	368	30	18	22	29	1.97
983248--983291	19	2.3	19	80	0	52	29	20	13	36	1.91
985867--986037	51	3.3	50	79	6	180	32	11	26	29	1.92
986022--986095	27	2.7	28	87	6	98	21	20	33	24	1.97
988569--988594	13	2.0	13	100	0	52	38	15	15	30	1.88
988548--988614	33	2.0	33	88	0	98	43	16	14	25	1.86
988634--988701	19	3.9	18	76	23	83	38	14	11	35	1.83
988656--988680	13	1.9	13	100	0	50	32	16	16	36	1.90
988637--988699	32	2.0	32	96	0	117	36	15	12	34	1.86
988757--988813	21	2.7	21	97	0	105	36	19	10	33	1.86
988824--988856	12	2.8	12	100	0	66	12	6	0	81	0.85
988821--988862	12	3.0	15	80	20	63	14	7	0	78	0.95
989455--990027	55	10.4	54	91	3	837	21	20	30	28	1.98
989721--989810	26	3.3	26	68	14	74	20	17	33	28	1.95
989751--989839	29	3.2	29	67	20	89	19	19	33	28	1.96
991018--991047	11	2.7	11	94	0	51	0	3	3	93	0.42

Tables:   1   2   3   4   5   6   7   8

The End!