genome.fa.s485.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold485
Parameters: 2 7 7 80 10 50 1000
Length:  999764

Tables:   1   2   3   4   5   6   7   8   

This is table  6  of  8  ( 928 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587820--587870	24	2.1	24	82	7	59	33	0	0	66	0.92
587815--587877	13	4.9	13	78	9	58	33	0	1	65	1.03
590917--590954	16	2.4	16	79	16	51	39	0	5	55	1.23
592315--592357	17	2.5	17	78	14	52	27	0	2	69	1.00
592348--592396	17	3.1	16	77	8	55	34	0	2	63	1.06
592665--592700	14	2.6	14	91	8	56	36	0	2	61	1.11
592656--592710	14	4.1	13	74	21	51	40	0	1	58	1.09
592664--592710	22	2.2	21	82	14	53	40	0	2	57	1.11
593040--593064	2	12.5	2	100	0	50	52	0	0	48	1.00
593991--594052	19	3.2	19	73	13	63	41	14	16	27	1.87
594040--594064	13	1.9	13	100	0	50	36	16	16	32	1.90
594019--594091	32	2.3	32	97	0	137	34	12	17	35	1.88
594021--594083	19	3.7	18	76	24	73	33	12	17	36	1.88
596499--596894	52	7.6	52	72	12	278	29	25	11	32	1.92
596620--596691	28	2.6	28	84	8	85	23	36	18	22	1.95
596674--596894	51	4.3	51	85	1	271	30	24	11	33	1.91
596674--596894	102	2.1	104	86	1	302	30	24	11	33	1.91
596877--596951	28	2.7	28	82	0	87	24	33	18	24	1.97
596500--597004	262	1.9	262	94	0	884	28	26	13	32	1.93
596907--597109	79	2.6	78	81	3	228	25	29	16	29	1.96
598662--598695	16	2.1	16	88	0	50	32	0	0	67	0.91
606522--606586	26	2.7	24	76	13	62	47	1	6	44	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
606840--606873	11	2.9	11	87	12	50	67	0	0	32	0.91
606970--607118	18	8.5	19	68	20	69	40	0	1	58	1.07
607006--607117	58	1.9	57	83	5	145	41	0	0	57	1.05
607069--607115	17	2.6	19	86	6	62	36	0	2	61	1.08
608072--608224	74	2.0	78	85	11	208	25	6	18	49	1.71
610072--610161	44	2.0	44	100	0	180	32	15	28	23	1.95
610075--610143	21	3.2	21	65	15	59	30	17	30	21	1.96
612902--612950	18	2.5	20	78	21	59	61	0	0	38	0.96
613979--614028	22	2.3	22	89	0	73	34	4	14	48	1.62
614333--614357	13	1.9	13	100	0	50	36	0	0	64	0.94
624869--625033	54	3.1	54	61	23	132	35	16	18	29	1.93
624883--625044	51	3.1	51	61	23	120	32	15	19	32	1.93
624837--625046	105	2.0	105	100	0	420	35	17	18	29	1.93
628160--628215	19	3.0	19	79	10	62	48	5	1	44	1.36
628181--628221	19	2.2	19	86	0	55	51	4	2	41	1.36
628273--628299	2	13.5	2	100	0	54	48	0	0	51	1.00
628643--628670	14	2.0	14	100	0	56	42	0	0	57	0.99
629047--629082	18	2.1	18	89	5	56	27	0	2	69	1.02
629218--629252	2	17.5	2	100	0	70	51	0	0	48	1.00
629350--629426	5	16.2	5	70	15	56	58	0	2	38	1.12
629354--629399	18	2.6	18	82	6	58	56	0	2	41	1.11
629348--629430	20	4.0	23	72	20	74	56	0	2	40	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632296--632323	2	14.0	2	100	0	56	50	50	0	0	1.00
637495--637536	18	2.3	18	91	0	66	40	0	4	54	1.21
637547--637576	4	7.2	4	92	7	51	73	0	3	23	0.98
641428--641483	28	2.0	28	89	6	87	28	0	0	71	0.86
641428--641483	9	6.0	10	76	19	59	28	0	0	71	0.86
642740--642807	34	2.0	34	91	0	109	35	10	8	45	1.69
643657--643826	85	2.0	85	94	0	295	31	15	16	37	1.90
643833--643878	22	2.1	22	84	8	58	34	15	36	13	1.86
644267--644297	16	1.9	16	93	0	53	41	19	6	32	1.77
648719--648780	16	3.8	16	80	6	70	45	1	0	53	1.10
648725--648767	17	2.6	16	88	3	59	44	2	0	53	1.13
653369--653393	13	1.9	13	100	0	50	40	8	16	36	1.77
654388--654519	42	3.1	42	83	2	149	46	0	39	12	1.48
660440--660499	29	2.0	31	83	6	79	43	0	3	53	1.17
660450--660522	30	2.4	29	82	10	85	49	1	1	47	1.18
661313--661345	5	6.4	5	93	6	57	42	0	0	57	0.98
664189--664235	24	2.1	21	85	14	60	55	12	12	19	1.69
667179--667229	18	2.7	20	79	11	63	49	3	1	45	1.32
668316--668350	3	11.7	3	93	0	61	34	2	0	62	1.10
668547--668586	21	1.9	21	90	10	64	65	0	0	35	0.93
668550--668598	19	2.4	21	80	10	57	57	0	0	42	0.99
669199--669241	16	2.8	16	89	10	63	62	2	0	34	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
673337--673403	25	2.6	27	82	15	81	50	1	0	47	1.10
674506--674539	17	2.0	17	94	0	59	52	0	14	32	1.42
677928--677956	3	9.7	3	100	0	58	34	0	31	34	1.58
678800--678836	9	4.1	9	89	0	56	40	2	0	56	1.13
679256--679288	10	3.3	10	95	0	57	48	6	0	45	1.27
679840--679870	2	15.5	2	93	0	53	48	0	3	48	1.17
681274--681321	21	2.5	19	78	21	55	43	2	2	52	1.24
686083--686125	22	2.0	22	86	9	61	58	0	2	39	1.11
687501--687543	21	2.1	20	83	12	52	6	18	0	74	1.04
688298--688425	68	1.9	68	93	0	220	38	8	20	32	1.83
692935--692991	25	2.2	26	87	3	80	52	0	5	42	1.24
693506--693558	14	3.9	14	72	5	54	50	0	3	45	1.19
696820--696882	30	2.1	31	80	13	71	47	1	0	50	1.10
697929--697966	13	2.9	14	88	11	62	44	0	0	55	0.99
698301--698365	25	2.7	23	75	11	67	36	0	3	60	1.13
709058--709083	2	13.0	2	100	0	52	50	0	50	0	1.00
710155--710196	19	2.3	18	88	8	59	69	0	0	30	0.89
710155--710196	11	3.5	13	78	18	54	69	0	0	30	0.89
710849--710900	18	2.9	17	75	8	50	51	0	0	48	1.00
710932--710974	23	1.9	22	85	4	59	53	9	0	37	1.33
714063--714089	2	13.5	2	100	0	54	48	0	0	51	1.00
716158--716223	29	2.3	29	84	7	89	51	1	0	46	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
717807--717837	11	2.8	11	90	0	53	32	0	0	67	0.91
722171--722253	15	5.4	16	70	24	63	55	0	0	44	0.99
722152--722226	32	2.3	33	84	9	91	53	0	0	46	1.00
722177--722242	27	2.4	28	80	10	82	54	0	0	45	0.99
722194--722254	27	2.2	27	80	8	70	57	0	0	42	0.98
723175--723204	2	15.0	2	100	0	60	50	0	0	50	1.00
725494--725534	16	2.5	16	88	4	55	58	2	4	34	1.32
725867--725908	20	2.1	20	86	8	59	57	0	0	42	0.99
731402--731447	22	2.1	22	88	8	67	34	0	17	47	1.48
734336--734393	2	29.0	2	92	0	98	0	46	0	53	1.00
737133--737194	15	3.8	17	74	21	53	43	0	1	54	1.09
737143--737230	14	6.3	14	72	12	56	51	1	1	46	1.15
738819--738848	14	2.1	14	93	0	51	26	30	33	10	1.89
739165--739310	44	3.1	45	73	16	118	47	1	0	51	1.09
739248--739345	36	2.7	36	77	12	94	51	0	0	48	1.00
739270--739313	20	2.1	21	87	4	63	45	0	0	54	0.99
739259--739331	20	3.9	20	73	19	61	50	0	0	49	1.00
739302--739345	16	2.8	16	86	3	54	52	0	0	47	1.00
740293--740319	7	3.9	7	100	0	54	55	0	0	44	0.99
740893--740943	3	17.0	3	100	0	102	33	0	0	66	0.92
741518--741570	22	2.5	22	81	9	56	56	0	0	43	0.99
747526--747555	8	3.6	8	91	8	51	23	43	23	10	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
752407--752459	15	3.6	14	76	14	54	56	1	0	41	1.10
752980--753033	2	27.0	2	80	0	63	46	5	3	44	1.44
753944--753981	2	19.0	2	100	0	76	50	0	0	50	1.00
754219--754258	2	20.0	2	94	0	71	47	0	2	50	1.14
754382--754431	23	2.1	24	96	3	93	44	24	4	28	1.72
762251--762336	44	2.0	44	86	4	120	37	5	15	41	1.71
768461--768505	8	5.8	8	76	23	51	57	8	0	33	1.30
768460--768511	15	3.4	15	84	10	61	59	7	1	30	1.36
768476--768514	16	2.5	16	91	4	62	56	5	2	35	1.35
771337--771398	26	2.4	25	82	15	74	43	0	1	54	1.09

Tables:   1   2   3   4   5   6   7   8