genome.fa.s726.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold726
Parameters: 2 7 7 80 10 50 1000
Length:  990522

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 587 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
601--683	40	2.1	40	86	4	114	44	10	9	34	1.72
1701--1757	18	3.3	17	81	13	64	66	0	0	33	0.92
3364--3583	112	2.0	112	89	0	343	38	12	10	38	1.78
3817--3854	18	2.1	18	85	9	51	39	2	5	52	1.38
14769--14802	17	1.9	18	88	5	52	50	0	0	50	1.00
14819--14865	23	2.0	24	87	4	69	63	0	2	34	1.06
17357--17391	17	2.1	17	100	0	70	28	14	22	34	1.93
18868--18897	2	15.0	2	92	0	51	53	0	46	0	1.00
20674--20727	27	2.0	27	89	3	83	38	7	20	33	1.80
21822--21857	2	18.5	2	94	5	65	0	47	0	52	1.00
22516--22568	18	2.9	19	75	20	51	45	0	0	54	0.99
22528--22589	22	2.7	23	78	14	65	50	0	0	50	1.00
23017--23084	21	3.2	21	74	17	68	48	0	0	51	1.00
23018--23064	20	2.2	21	88	7	69	44	0	0	55	0.99
23018--23078	20	2.9	19	79	13	59	49	0	0	50	1.00
23641--23671	16	1.9	16	93	0	53	22	35	16	25	1.94
23915--23998	43	2.0	41	90	4	132	55	9	2	32	1.45
26268--26304	19	2.0	19	89	5	58	64	0	0	35	0.94
26820--26866	14	3.5	13	83	11	60	82	2	14	0	0.75
26813--26866	25	2.1	26	86	3	74	83	1	14	0	0.73
26813--26863	18	2.8	18	83	16	70	82	1	15	0	0.76
27410--27446	19	2.0	19	94	5	67	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38303--38341	17	2.2	18	86	4	53	61	0	7	30	1.24
39780--39836	26	2.2	26	87	3	78	56	0	0	43	0.99
40759--40792	3	11.3	3	100	0	68	32	0	0	67	0.91
41405--41437	2	16.5	2	93	0	57	45	0	3	51	1.16
41749--42476	107	6.9	107	85	2	993	28	12	15	43	1.84
48896--48928	16	2.1	16	100	0	66	30	21	12	36	1.90
50174--50243	27	2.6	27	75	11	70	48	8	2	40	1.49
71116--71209	25	3.7	28	68	24	80	57	1	0	41	1.06
71116--71209	23	3.7	26	69	17	72	57	1	0	41	1.06
71219--71252	13	2.5	13	95	4	59	70	0	0	29	0.87
71219--71252	7	5.0	7	92	7	61	70	0	0	29	0.87
71395--71446	25	2.1	25	86	10	72	30	5	5	57	1.46
72629--72661	2	16.5	2	100	0	66	48	0	0	51	1.00
74518--74567	19	2.6	18	81	9	55	62	0	0	38	0.96
74515--74605	39	2.4	38	80	12	100	57	3	0	39	1.15
86159--86197	19	2.0	20	90	5	62	41	5	0	53	1.23
88902--88944	16	2.7	15	86	13	59	79	2	0	18	0.85
101052--101123	28	2.6	28	84	4	83	25	19	33	22	1.97
101112--101448	52	6.4	53	69	16	173	32	12	24	29	1.92
101113--101448	104	3.2	102	72	14	299	32	12	24	30	1.92
101255--101339	27	3.1	27	83	8	102	27	21	29	22	1.99
101047--101448	212	1.9	212	87	5	598	32	13	25	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101327--101448	51	2.3	52	83	5	156	34	11	22	31	1.90
103810--103835	13	2.0	13	100	0	52	38	15	15	30	1.88
103789--103855	33	2.0	33	88	0	98	43	16	14	25	1.86
104590--105611	59	17.5	59	92	2	1411	25	21	28	24	1.99
106601--106645	11	4.0	11	91	5	72	0	0	13	86	0.57
106600--106644	13	3.4	14	90	6	67	0	0	11	88	0.50
119131--119202	28	2.6	28	84	0	81	23	19	34	22	1.96
119191--119527	52	6.4	52	67	14	183	32	11	25	30	1.92
119346--119418	27	2.7	27	89	6	103	23	19	31	26	1.98
119126--119529	212	1.9	212	88	4	618	31	12	26	28	1.93
121883--121908	13	2.0	13	100	0	52	38	15	15	30	1.88
121957--122013	13	3.9	13	76	24	60	33	15	14	36	1.88
121970--122038	19	4.1	18	75	24	78	37	14	11	36	1.83
121954--122032	32	2.5	32	97	0	149	35	15	12	36	1.85
122070--122146	21	3.7	21	89	3	111	35	16	12	35	1.88
123767--124555	42	18.8	42	82	4	806	11	31	19	37	1.87
126751--126794	16	2.7	16	82	3	61	81	2	0	15	0.78
128523--128580	29	2.0	30	86	10	84	60	8	3	27	1.42
130659--130736	10	7.5	10	69	12	50	58	2	0	38	1.12
130663--130711	16	3.2	16	75	18	59	65	2	0	32	1.04
130774--130803	7	4.3	7	91	0	51	56	13	13	16	1.67
134825--134897	8	8.8	9	83	11	54	0	26	1	72	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134850--134897	4	12.0	4	86	8	71	0	22	0	77	0.78
135249--135278	14	2.1	14	93	0	51	50	0	0	50	1.00
135304--135354	8	6.5	8	77	4	50	1	19	0	78	0.85
135324--135353	4	7.5	4	92	0	51	0	20	0	80	0.72
135324--135354	16	1.9	16	100	0	62	0	19	0	80	0.71
135733--135781	12	3.8	13	76	12	57	40	0	0	59	0.98
135741--135796	26	2.1	27	90	6	89	41	0	0	58	0.98
135723--135791	23	2.9	23	78	21	72	44	0	0	55	0.99
135725--135809	25	3.5	24	78	15	77	44	0	0	55	0.99
136036--136090	23	2.3	23	93	3	92	58	7	20	14	1.60
136048--136089	12	3.6	12	80	6	59	61	2	21	14	1.43
136800--136865	34	1.9	34	93	0	114	24	6	16	53	1.66
138290--138369	27	2.9	27	86	1	115	43	22	12	21	1.86
142794--142889	27	3.7	26	83	9	115	45	23	6	23	1.75
142811--142890	27	2.9	27	94	1	133	45	25	6	23	1.76
146033--146094	24	2.6	23	82	5	70	40	12	6	40	1.69
147090--147143	27	2.0	27	100	0	108	22	25	0	51	1.48
147117--147479	192	1.9	194	87	2	543	28	18	11	41	1.86
148511--148540	14	2.2	14	94	5	53	33	23	13	30	1.93
150109--150143	16	2.2	16	90	5	54	5	14	5	74	1.19
150274--150707	152	2.8	154	85	8	610	51	11	2	33	1.53
150728--150766	18	2.2	18	100	0	78	51	5	5	38	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151461--151518	18	3.0	18	73	22	55	24	0	3	72	1.00
151473--151510	13	2.8	14	88	8	60	26	0	5	68	1.11
421095--421150	11	5.0	11	77	12	51	41	1	0	57	1.09
421120--421191	11	6.9	11	78	13	64	33	1	0	65	1.02
421743--421791	18	2.7	18	82	17	66	44	0	0	55	0.99
421728--421829	45	2.2	46	79	10	111	47	0	0	51	1.07
421728--421829	47	2.2	45	81	10	118	47	0	0	51	1.07
422161--422194	15	2.1	17	89	10	54	44	0	0	55	0.99
423059--423100	22	1.9	22	85	0	57	35	4	7	52	1.50
431073--431101	2	15.0	2	92	7	51	48	0	0	51	1.00
432443--432514	30	2.4	28	77	13	72	44	0	0	55	0.99
433098--433137	21	1.9	21	90	10	64	40	0	0	60	0.97
437817--437855	2	19.5	2	83	0	51	51	2	46	0	1.14
437904--437966	21	2.9	22	76	11	67	49	0	0	50	1.00
439255--439314	16	3.5	17	76	12	61	46	0	0	53	1.00
439623--439669	5	10.2	5	86	13	66	65	0	0	34	0.93
439621--439669	17	2.7	19	87	12	68	65	0	0	34	0.93
439621--439676	19	3.0	20	80	19	68	66	0	0	33	0.92
439711--439743	15	2.1	16	88	5	50	48	0	0	51	1.00
439775--439908	11	12.6	11	64	19	52	53	0	1	44	1.15
439780--439916	30	4.5	27	64	25	69	53	0	1	44	1.14
439776--439926	29	5.1	29	69	21	91	53	0	1	44	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439776--439922	9	16.0	9	66	26	62	53	0	1	44	1.14
439786--439838	20	2.7	20	77	14	65	54	0	0	45	0.99
439851--439926	27	2.8	27	74	18	77	53	0	0	46	1.00
440220--440262	16	2.7	15	80	13	59	23	2	0	74	0.93
440663--440692	3	10.0	3	100	0	60	66	0	0	33	0.92
442102--442156	16	3.6	16	80	9	78	36	3	5	54	1.41
442100--442161	30	2.1	30	100	0	124	37	3	8	51	1.48
442923--442953	2	15.5	2	93	0	53	48	0	0	51	1.00
445135--445192	21	2.7	22	71	5	57	53	0	0	46	1.00
445112--445182	28	2.6	27	82	10	74	50	0	0	49	1.00

Tables:   1   2   3   4   5