genome.fa.s726.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold726
Parameters: 2 7 7 80 10 50 1000
Length:  990522

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 587 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
551015--551067	16	3.5	16	66	23	51	52	1	1	43	1.23
551281--551328	21	2.2	23	85	14	75	41	0	0	58	0.98
551448--551476	14	2.0	15	93	6	51	65	0	0	34	0.93
552149--552177	2	14.5	2	100	0	58	48	0	0	51	1.00
552860--552902	23	1.9	23	85	4	61	58	6	4	30	1.45
553939--553969	2	15.5	2	100	0	62	51	0	0	48	1.00
554531--554584	3	18.0	3	96	0	99	66	1	0	31	1.02
554665--554703	12	3.2	12	85	3	51	33	0	0	66	0.92
557413--557447	2	17.5	2	100	0	70	48	0	0	51	1.00
557593--557626	2	17.0	2	87	0	50	50	0	2	47	1.16
557956--558014	18	3.6	18	74	25	67	44	5	0	50	1.24
557960--558019	31	1.9	31	93	6	104	45	5	0	50	1.23
564297--564329	17	1.9	17	93	0	57	33	0	3	63	1.10
564360--564394	13	2.6	14	90	4	54	42	2	2	51	1.31
564524--564578	22	2.5	22	77	8	58	40	0	3	56	1.17
564524--564568	24	2.0	21	87	12	63	37	0	2	60	1.09
564859--564911	25	2.1	25	82	6	63	52	0	1	45	1.11
566043--566111	27	2.5	27	95	2	120	50	13	5	30	1.64
575933--575973	22	1.9	21	85	5	55	41	0	0	58	0.98
576166--576313	11	13.6	11	72	11	99	35	0	0	63	1.04
576166--576322	27	5.9	26	72	18	103	35	0	0	63	1.04
576204--576311	12	9.3	11	67	19	51	35	0	0	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
576164--576320	48	3.3	48	73	15	130	35	0	0	63	1.04
576278--576319	19	2.3	19	83	4	50	33	2	2	61	1.21
576174--576317	59	2.6	54	73	16	125	35	0	0	63	1.05
576163--576322	8	22.3	7	68	24	61	35	0	0	63	1.04
576163--576324	30	5.4	29	72	18	113	34	0	0	64	1.03
576745--576856	33	3.2	33	64	18	82	40	2	5	51	1.39
576708--576859	72	2.1	72	97	0	286	36	3	5	54	1.39
577371--577410	6	6.8	6	82	5	55	47	5	0	47	1.24
577690--577719	14	2.1	14	93	0	51	86	0	3	10	0.67
582328--582494	88	1.9	88	98	0	325	35	17	12	34	1.87
584317--584378	20	3.0	20	69	9	54	58	0	1	40	1.08
584289--584381	11	8.4	11	70	20	61	52	0	1	46	1.07
584311--584413	45	2.2	46	75	11	104	53	0	0	44	1.13
586552--586580	2	14.5	2	100	0	58	0	48	0	51	1.00
587247--587284	17	2.2	17	86	9	51	36	39	5	18	1.73
592638--592666	13	2.2	13	100	0	58	93	0	6	0	0.36
593095--593133	10	3.9	10	93	0	69	69	0	20	10	1.17
597332--597367	13	2.8	13	87	4	56	50	0	0	50	1.00
598282--598338	17	3.3	17	72	18	55	59	1	0	38	1.08
598334--598364	14	2.2	14	100	0	62	45	0	0	54	0.99
600418--600461	16	2.9	15	83	6	61	45	0	2	52	1.13
600638--600676	18	2.2	19	86	9	55	53	5	2	38	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
600971--601003	4	8.2	4	100	0	66	24	0	0	75	0.80
601242--601275	14	2.5	13	86	9	50	29	0	0	70	0.87
605241--605275	18	1.9	18	88	0	52	31	0	0	68	0.90
605232--605273	10	4.2	10	79	8	50	28	0	0	71	0.86
611088--611124	17	2.1	18	90	10	58	70	0	0	29	0.88
615352--615384	2	16.5	2	100	0	66	51	0	48	0	1.00
619514--619550	2	18.5	2	100	0	74	0	48	0	51	1.00
619631--619691	28	2.1	29	81	6	70	55	0	0	44	0.99
619832--619889	23	2.6	23	72	2	64	39	0	5	55	1.22
624583--624643	29	2.1	29	82	11	72	49	1	0	49	1.10
625392--625419	4	7.0	4	100	0	56	75	0	0	25	0.81
627884--627919	18	2.0	18	94	0	63	61	0	2	36	1.11
628929--628961	13	2.6	13	90	4	50	21	3	3	72	1.11
633784--633809	2	13.0	2	100	0	52	50	0	0	50	1.00
634868--634905	3	12.7	3	100	0	76	68	0	0	31	0.90
635733--635757	2	12.5	2	100	0	50	52	0	0	48	1.00
635988--636020	16	2.0	17	88	5	50	39	0	0	60	0.97
637682--637710	3	9.7	3	100	0	58	65	0	0	34	0.93
639875--639915	21	2.0	21	85	4	57	41	0	0	58	0.98
639875--639912	20	1.9	20	84	10	51	39	0	0	60	0.97
640198--640242	16	2.8	16	79	0	54	35	0	0	64	0.94
640771--640813	6	7.2	6	82	10	52	44	0	4	51	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
640776--640823	24	2.0	25	91	4	80	37	0	6	56	1.25
641166--641215	23	2.2	24	78	10	59	44	0	0	56	0.99
641186--641221	17	2.0	19	89	10	58	55	0	0	44	0.99
642058--642096	20	2.0	20	89	0	60	12	41	5	41	1.65
646484--646546	28	2.3	27	83	8	74	26	6	22	44	1.76
646630--646668	20	2.0	20	89	0	60	12	41	5	41	1.65
648180--648213	18	1.9	17	88	5	50	50	0	0	50	1.00
649042--649078	16	2.2	17	90	4	58	48	0	0	51	1.00
649069--649318	121	2.1	121	82	0	293	42	7	7	42	1.60
649210--649264	17	3.5	16	72	18	53	56	0	1	41	1.10
649319--649354	4	8.5	4	88	11	54	22	2	0	75	0.94
651925--651967	22	2.0	22	100	0	86	58	0	23	18	1.40
652953--652994	21	2.1	19	83	16	50	52	0	7	40	1.29
653986--654022	18	2.0	20	89	10	60	67	0	0	32	0.91
653983--654047	34	1.9	34	84	6	87	63	0	0	36	0.95
654485--654523	16	2.4	16	83	12	53	53	2	2	41	1.28
654828--654891	23	2.9	22	68	22	62	26	3	3	67	1.21
655582--655607	13	2.0	13	100	0	52	15	0	0	84	0.62
656044--656099	14	4.2	13	71	15	51	28	1	1	67	1.10
657149--657233	19	4.5	19	69	18	61	36	1	2	60	1.18
657161--657216	16	3.6	17	68	26	61	37	0	1	60	1.07
657167--657231	28	2.3	28	81	0	76	40	1	3	55	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
658216--658268	21	2.6	21	80	11	58	43	0	0	56	0.99
658207--658289	32	2.6	32	78	5	87	45	0	0	54	0.99
667889--667924	3	12.0	3	100	0	72	66	0	0	33	0.92
667975--668065	22	4.1	22	77	7	87	47	1	0	51	1.07
669312--669396	42	2.0	41	84	8	109	57	0	2	40	1.11
670049--670098	18	2.7	20	73	17	54	48	0	0	52	1.00
670052--670120	36	1.9	36	90	0	111	42	0	1	56	1.08
670059--670120	18	3.4	18	75	16	74	38	0	1	59	1.07
673551--673595	22	2.0	24	82	8	58	60	11	6	22	1.54
675747--675802	24	2.3	23	85	11	76	57	0	0	42	0.99
675762--675812	26	2.0	25	88	7	77	54	0	0	45	0.99
676165--676228	32	2.0	33	84	3	85	56	3	0	40	1.15
677935--677972	19	2.0	19	85	10	51	34	0	5	60	1.19
679135--679301	67	2.4	67	84	4	192	41	6	4	47	1.49
679548--679622	22	3.2	23	81	11	82	57	0	4	38	1.18
679916--679969	17	3.1	17	74	10	56	31	0	1	66	1.02
679919--679992	30	2.5	29	86	6	96	32	0	1	66	1.00
679926--679993	12	5.8	11	75	11	55	32	0	1	66	1.01
679922--679995	35	2.1	35	78	16	82	33	0	1	64	1.02
680964--681009	2	23.0	2	100	0	92	50	0	0	50	1.00
684120--684151	3	10.7	3	93	0	55	65	0	3	31	1.08
685599--685641	13	3.5	12	84	12	52	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
685599--685641	6	7.0	6	80	15	52	48	0	0	51	1.00
685933--685964	15	2.0	17	88	11	50	56	0	0	43	0.99
685928--685990	27	2.4	26	81	7	74	58	1	0	39	1.07
685928--685990	13	4.8	13	73	9	56	58	1	0	39	1.07
686130--686156	14	1.9	14	100	0	54	44	0	0	55	0.99
686840--686880	22	2.0	19	86	13	55	68	7	0	24	1.15
688400--688445	21	2.1	22	84	11	60	34	0	0	65	0.93
688453--688548	33	3.1	32	65	26	80	40	5	4	50	1.44
688428--688548	61	2.0	60	96	1	224	38	4	4	52	1.43
689044--689085	22	1.9	22	85	9	59	35	9	11	42	1.74

Tables:   1   2   3   4   5