genome.fa.s726.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold726
Parameters: 2 7 7 80 10 50 1000
Length:  990522

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 587 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445631--445692	20	3.0	20	76	9	63	59	3	0	37	1.13
445641--445692	22	2.5	22	90	6	81	59	3	0	36	1.16
445791--445835	18	2.5	18	79	10	56	46	2	0	51	1.13
446554--446617	19	3.2	19	80	12	58	56	0	0	43	0.99
446626--446660	15	2.4	15	90	4	54	20	5	0	74	1.02
447877--447919	17	2.5	18	77	11	54	58	0	2	39	1.11
448135--448192	22	2.6	22	76	7	64	51	3	1	43	1.28
448181--448209	9	3.0	10	90	10	51	72	0	0	27	0.85
449270--449306	17	2.1	18	85	14	51	48	0	5	45	1.25
451134--451177	20	2.3	18	77	11	52	43	6	0	50	1.29
451425--451474	25	2.0	25	84	0	64	38	18	10	34	1.84
459659--459735	25	3.0	25	71	16	61	44	0	0	55	0.99
459673--459773	48	2.2	44	81	12	105	46	0	0	53	1.00
459725--459769	23	2.0	23	82	8	56	53	0	0	46	1.00
460265--460328	21	3.0	21	79	6	74	42	1	0	56	1.09
460210--460393	16	11.8	16	74	14	100	39	1	0	58	1.08
460339--460381	7	5.6	7	80	20	50	37	0	0	62	0.95
460287--460377	9	10.4	9	68	19	59	40	2	0	57	1.11
460522--460571	15	3.3	15	81	10	66	70	2	26	2	1.09
460746--460809	11	5.6	11	83	12	85	26	0	1	71	0.94
460746--460809	23	2.8	23	81	11	87	26	0	1	71	0.94
460749--460818	23	3.1	22	76	13	72	25	0	2	71	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461340--461377	15	2.6	14	91	4	58	39	0	0	60	0.97
461332--461425	22	4.9	21	73	20	64	43	0	0	56	0.99
461340--461387	14	3.3	14	80	16	53	39	0	0	60	0.97
461361--461422	21	2.9	21	83	7	63	45	0	0	54	0.99
461377--461427	21	2.4	22	83	9	70	49	0	0	50	1.00
461706--461757	21	2.5	21	100	0	104	42	0	0	57	0.98
461776--461800	8	3.1	8	100	0	50	60	0	0	40	0.97
467530--467564	16	2.2	16	89	0	52	22	5	22	48	1.72
468005--468043	16	2.5	16	91	4	62	53	15	0	30	1.42
469107--469155	24	2.0	24	100	0	98	24	28	8	38	1.84
474469--474505	19	1.9	19	88	0	56	43	0	2	54	1.14
475287--475316	13	2.3	13	94	0	51	70	3	0	26	1.03
475620--475668	25	1.9	25	88	12	73	51	0	0	48	1.00
475849--475879	12	2.5	12	94	5	53	45	0	0	54	0.99
475922--475956	14	2.5	14	90	0	52	40	0	0	60	0.97
475931--475958	14	2.0	14	100	0	56	35	0	0	64	0.94
479739--479851	42	2.7	42	91	0	190	21	15	23	39	1.91
479838--480564	201	3.6	200	83	2	832	24	23	18	32	1.97
480301--480425	48	2.6	49	78	8	123	23	24	16	36	1.95
485377--485420	21	2.2	20	84	12	54	75	2	0	22	0.92
485515--485609	19	4.9	19	77	10	104	23	21	8	47	1.77
485674--485714	16	2.6	16	96	0	73	29	19	4	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485537--485698	89	1.8	88	84	5	220	27	21	8	42	1.82
487200--487367	93	1.9	91	88	6	261	7	21	13	57	1.62
487778--487821	21	2.2	20	84	12	54	22	0	2	75	0.92
488250--488663	43	9.8	42	75	10	254	40	19	26	14	1.90
488560--488664	42	2.5	42	85	3	131	44	19	26	9	1.81
488586--488666	42	1.9	42	92	0	135	43	18	27	11	1.84
500390--500546	85	1.8	86	93	1	271	8	21	13	56	1.65
501582--501623	2	21.0	2	90	0	66	52	2	0	45	1.13
505353--505395	2	21.5	2	100	0	86	51	0	48	0	1.00
507523--507561	19	2.0	20	85	5	53	0	15	2	82	0.79
507523--507561	18	2.2	18	85	0	51	0	15	2	82	0.79
510344--510411	19	3.5	19	90	8	93	39	1	0	58	1.07
510344--510420	39	2.0	39	82	10	95	40	1	0	58	1.06
510506--510557	15	3.5	15	74	7	52	65	0	1	32	1.04
510733--510775	15	2.6	17	78	14	54	41	0	0	58	0.98
510764--510833	18	4.0	18	70	19	58	42	1	1	54	1.18
510756--510817	32	1.9	32	90	6	99	46	1	1	50	1.20
510796--510855	9	5.9	11	75	23	60	36	1	1	60	1.17
511022--511094	4	17.0	4	74	20	51	46	1	0	52	1.09
511022--511094	9	7.9	9	75	20	62	46	1	0	52	1.09
512183--512223	10	4.1	10	87	9	57	43	4	0	51	1.23
512655--512740	42	2.0	42	82	8	104	50	2	2	45	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
512795--512839	18	2.4	18	77	3	54	53	0	0	46	1.00
512821--512899	37	2.1	35	84	9	95	56	1	0	41	1.07
514969--515010	21	2.0	21	90	4	68	2	21	0	76	0.90
515552--515601	9	5.7	9	79	9	50	34	0	0	66	0.92
515554--515600	15	3.1	15	78	9	60	31	0	0	68	0.90
515842--515875	15	2.3	15	89	0	50	50	0	2	47	1.16
515859--515910	27	2.0	27	88	3	79	50	0	1	48	1.12
516848--516923	4	19.0	4	83	0	62	50	13	0	36	1.42
516848--516922	6	11.8	6	92	5	87	50	13	0	36	1.42
517027--517080	17	3.1	17	84	7	65	50	1	0	48	1.11
517636--517671	18	2.0	18	100	0	72	27	27	11	33	1.91
519246--519284	20	1.9	21	89	5	62	61	0	0	38	0.96
519608--519649	21	2.2	20	84	16	54	59	0	0	40	0.97
521337--521379	17	2.4	18	85	11	54	53	0	0	46	1.00
521366--521399	17	2.1	16	89	10	52	47	2	0	50	1.16
525017--525088	28	2.4	29	82	15	76	44	11	4	40	1.59
525017--525100	28	2.8	29	77	17	75	40	15	3	40	1.64
525263--525294	16	2.0	16	93	0	55	50	3	0	46	1.17
526251--526286	2	18.0	2	100	0	72	50	0	0	50	1.00
528330--528368	2	19.5	2	100	0	78	51	0	0	48	1.00
529177--529244	18	3.8	19	77	16	83	60	0	1	38	1.06
529183--529253	28	2.6	26	82	10	81	59	0	1	39	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530150--530191	16	2.5	18	81	14	54	64	0	11	23	1.27
530150--530190	17	2.5	17	84	11	50	63	0	12	24	1.28
531771--531811	2	20.5	2	100	0	82	51	0	0	48	1.00
532089--532150	27	2.3	27	80	20	69	45	0	0	54	0.99
532116--532149	13	2.6	13	86	13	52	41	0	0	58	0.98
532146--532184	20	2.0	20	85	10	53	51	0	0	48	1.00
534558--534604	19	2.4	19	86	10	60	48	0	0	51	1.00
535242--535299	32	1.9	30	89	10	75	50	0	0	50	1.00
538308--538355	18	2.4	19	83	16	62	56	0	2	41	1.11
538329--538394	25	2.6	24	83	9	69	63	0	6	30	1.18
538409--538609	106	1.9	104	84	7	266	29	8	11	49	1.70
541496--541581	45	1.9	44	85	2	118	52	9	11	26	1.68
542696--542745	23	2.0	26	85	11	70	40	2	0	58	1.10
543068--543146	42	1.9	41	84	7	106	46	0	0	53	1.00
543221--543256	2	18.0	2	88	0	54	44	0	0	55	0.99
543663--543707	19	2.3	19	88	11	65	64	0	0	35	0.94
544178--544219	21	2.0	20	86	13	59	61	0	0	38	0.96
547416--547450	17	2.1	17	94	5	63	20	0	0	80	0.72
547636--547756	38	3.3	36	76	15	108	45	0	0	53	1.06
547666--547836	37	4.6	37	74	9	104	43	1	0	54	1.07
547670--547784	45	2.4	47	80	13	114	45	1	0	53	1.10
547636--547810	37	4.9	36	76	10	110	46	1	0	52	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
547772--547817	24	1.9	24	86	8	67	43	0	0	56	0.99
547811--547895	31	2.9	31	81	16	85	34	1	1	63	1.10
547826--547922	27	3.5	27	84	8	90	36	1	1	61	1.10
547878--547948	7	10.4	7	74	17	69	45	0	0	54	0.99
547826--547946	27	4.3	26	87	6	89	39	0	0	58	1.09
549704--549735	2	16.5	2	93	6	57	50	0	0	50	1.00
549998--550047	23	2.2	22	82	6	64	26	0	2	72	0.96
550083--550143	23	2.5	25	74	17	65	44	0	3	52	1.17
550492--550529	3	12.7	3	100	0	76	65	0	0	34	0.93
550842--550885	14	3.1	14	86	3	61	40	0	6	52	1.28

Tables:   1   2   3   4   5