genome.fa.s793.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold793
Parameters: 2 7 7 80 10 50 1000
Length:  691781

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 503 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288708--288732	13	1.9	13	100	0	50	36	16	16	32	1.90
292270--292309	20	2.0	20	95	0	71	35	17	15	32	1.91
292847--293067	93	2.4	92	85	4	304	34	14	13	37	1.85
293693--293727	17	2.1	17	94	0	61	40	8	17	34	1.80
298039--298063	13	1.9	13	100	0	50	32	16	16	36	1.90
300107--300169	30	2.1	30	96	0	117	49	4	12	33	1.62
300789--300827	20	1.9	20	89	5	60	38	23	15	23	1.92
300816--300879	32	2.0	33	87	3	94	31	17	15	35	1.91
300969--301069	43	2.3	43	93	0	166	35	17	14	31	1.91
303147--303182	13	2.8	13	95	0	63	52	5	0	41	1.24
303524--303576	26	2.0	26	100	0	106	41	7	11	39	1.69
303562--303845	79	3.6	80	79	6	310	35	13	22	28	1.92
303785--303896	51	2.2	51	88	3	163	33	12	25	29	1.92
303699--303975	130	2.1	130	81	6	328	35	12	23	28	1.92
303627--304053	209	2.0	209	84	7	564	35	13	22	28	1.92
303828--304216	158	2.5	155	84	5	480	34	13	24	27	1.93
303574--304114	288	1.9	288	83	4	698	35	12	22	29	1.91
303831--304219	79	5.0	79	81	6	402	34	13	23	28	1.92
312933--312957	13	1.9	13	100	0	50	36	16	16	32	1.90
323271--323329	20	3.0	19	80	7	73	40	11	15	32	1.83
324054--324185	49	2.8	47	86	3	167	31	18	28	21	1.97
324055--324215	46	3.5	46	83	3	162	32	18	26	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324308--325635	28	46.8	28	78	9	759	25	16	31	27	1.96
324290--325206	60	16.0	56	78	10	714	23	17	30	28	1.97
324821--324859	19	2.1	19	90	0	60	23	15	25	35	1.94
324764--325181	88	5.0	76	83	8	296	23	17	29	29	1.97
324745--324944	104	1.9	104	83	4	260	24	16	29	30	1.96
324366--325122	309	2.4	309	84	7	915	22	18	30	28	1.97
324840--325206	88	4.2	89	88	3	469	23	17	29	28	1.97
325208--325791	55	10.6	55	84	3	692	30	14	31	23	1.94
325208--325791	83	7.0	83	86	2	759	30	14	31	23	1.94
325158--325791	28	22.9	28	82	5	648	29	14	31	24	1.94
325216--325791	276	2.1	275	90	2	906	30	14	31	24	1.94
327056--327149	43	2.2	44	81	9	104	7	9	10	72	1.28
327080--327150	22	3.2	22	67	18	58	8	9	8	73	1.26
327066--327138	35	2.1	35	85	12	96	6	9	9	73	1.24
328953--329006	21	2.7	20	83	11	65	40	14	14	29	1.86
333052--333082	15	2.1	15	93	0	53	48	16	22	12	1.80
335155--335193	13	3.0	13	100	0	78	30	15	15	38	1.88
337603--337628	13	2.0	13	100	0	52	38	15	15	30	1.88
343199--343253	20	2.7	21	85	2	76	38	12	16	32	1.86
343166--343231	33	2.0	33	85	11	91	37	16	15	30	1.90
343295--343346	20	2.7	20	90	3	79	38	21	13	26	1.90
346345--346429	38	2.2	38	85	4	109	25	15	18	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346344--346440	38	2.6	36	79	11	104	22	14	21	41	1.89
354979--355105	52	2.4	53	84	9	161	37	7	24	31	1.82
355038--355398	80	4.5	79	82	10	403	33	9	26	31	1.88
354907--355197	134	2.2	134	82	6	340	35	10	23	31	1.88
355049--355398	160	2.2	161	86	5	469	33	9	25	31	1.88
355688--355727	3	14.0	3	84	10	57	70	0	0	30	0.88
355679--355725	14	3.4	14	80	16	53	72	0	0	27	0.85
355683--355732	23	2.1	24	85	10	68	72	0	0	28	0.86
356215--356259	21	2.1	21	84	8	56	68	11	13	6	1.37
356685--356728	16	2.7	16	86	10	54	75	0	25	0	0.81
360383--360436	20	2.6	21	85	2	74	40	9	16	33	1.80
360484--360539	20	2.7	21	86	10	71	30	14	10	44	1.79
363283--363353	28	2.5	28	82	11	92	25	23	22	28	2.00
363430--363708	128	2.2	130	85	5	370	28	23	10	37	1.88
363561--363785	80	2.9	80	81	6	291	28	24	11	35	1.90
367503--367541	13	3.0	13	96	0	69	30	17	15	35	1.91
370027--370051	13	1.9	13	100	0	50	32	16	16	36	1.90
376798--376923	52	2.4	52	90	0	207	35	19	17	26	1.94
386790--386842	9	5.6	9	79	16	54	83	13	1	1	0.82
386800--386845	17	2.8	16	83	3	56	84	10	2	2	0.79
386790--386846	13	4.3	14	77	8	57	82	14	1	1	0.83
387829--389021	61	20.3	60	80	9	1163	25	28	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387844--389021	121	10.0	120	83	7	1173	25	28	21	24	1.99
387852--388934	298	3.7	298	90	3	1657	26	28	21	23	1.99
389853--389878	13	2.0	13	100	0	52	30	15	15	38	1.88
392231--392352	52	2.3	53	85	2	158	31	24	11	31	1.91
392290--392966	79	8.5	79	85	2	849	27	23	13	34	1.93
396641--396691	19	2.7	19	96	0	93	31	11	17	39	1.86
396767--396889	52	2.4	52	100	0	246	35	19	19	25	1.95
404987--405433	31	13.9	30	74	14	238	23	29	12	34	1.92
404987--405400	62	6.4	61	74	14	300	23	29	13	34	1.92
405084--405479	34	12.0	33	76	8	254	22	29	11	36	1.90
405115--405479	66	5.5	67	77	7	307	22	29	11	36	1.89
405023--405433	197	2.1	197	87	4	602	23	29	12	34	1.92
405540--406822	49	26.8	49	80	8	1330	26	25	17	30	1.98
405588--406822	92	12.9	92	84	9	1213	26	25	17	30	1.98
406272--406339	21	3.2	21	67	19	59	26	25	19	29	1.98
406265--406330	22	3.0	22	66	30	52	27	22	21	28	1.99
405541--406822	341	3.8	338	88	5	1799	26	25	17	30	1.98
406780--406885	55	1.9	54	82	1	131	25	23	13	37	1.91
406908--407150	53	4.7	50	77	7	211	24	24	16	34	1.96
406963--407150	101	1.9	100	80	5	218	26	25	16	31	1.96
407007--407205	107	1.9	101	81	8	238	25	25	15	33	1.95
407108--407213	55	1.9	55	82	0	131	24	24	13	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406701--407378	328	2.1	328	94	0	1196	23	25	15	35	1.94
408087--408162	38	2.0	38	97	0	143	44	9	22	23	1.81
408871--408938	32	2.1	32	94	0	118	36	10	14	38	1.81
414995--415118	52	2.4	51	93	4	205	29	17	18	34	1.94
414995--415138	52	2.8	50	84	13	177	30	17	18	33	1.94
415127--415151	13	1.9	13	100	0	50	36	16	16	32	1.90
415215--415239	13	1.9	13	100	0	50	32	16	16	36	1.90
420921--421272	31	10.9	32	75	15	101	23	28	13	34	1.93
420983--421378	34	12.0	34	77	8	282	22	29	12	35	1.91
421021--421119	35	2.9	35	90	4	148	22	29	12	36	1.90
420929--421332	65	6.2	66	72	14	200	23	29	12	34	1.92
420929--421326	196	2.0	195	87	6	574	22	29	13	34	1.92
421021--421389	67	5.6	67	78	9	283	22	30	11	35	1.90
421446--422786	49	27.8	49	79	8	1298	26	25	17	31	1.97
421494--422737	92	13.0	92	82	9	1172	26	25	17	30	1.97
421447--422728	340	3.8	338	88	3	1823	26	25	17	30	1.97
421446--422737	243	5.4	241	82	8	1333	26	25	17	31	1.97
422810--422956	53	2.8	52	77	5	143	23	23	17	35	1.95
424409--424473	19	3.8	18	67	24	59	33	10	15	40	1.82
424411--424478	32	2.1	32	91	0	109	35	10	16	38	1.82
429406--429450	20	2.1	21	84	8	56	22	46	24	6	1.75
430673--430716	21	2.0	21	82	4	52	36	2	27	34	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431272--431323	21	2.5	21	81	9	63	38	15	17	28	1.90
432871--433503	155	4.1	152	77	8	530	39	17	17	26	1.91
434694--434732	21	1.9	21	89	5	62	56	20	10	12	1.65
435606--435662	3	19.3	3	89	10	91	66	0	0	33	0.92
435641--436171	164	3.2	162	82	9	546	53	8	9	28	1.64
437271--437320	24	2.1	24	96	0	91	8	14	0	78	0.97
444789--444868	21	3.8	21	77	8	74	28	12	15	43	1.82
445245--445411	78	2.1	78	80	5	185	38	13	19	29	1.89
446331--446355	13	1.9	13	100	0	50	40	16	8	36	1.77
446986--447053	22	3.1	21	85	8	91	33	25	1	39	1.65

Tables:   1   2   3   4   5