genome.fa.s793.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold793
Parameters: 2 7 7 80 10 50 1000
Length:  691781

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 503 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448784--448809	13	2.0	13	100	0	52	38	15	15	30	1.88
451994--452088	19	5.6	19	71	27	88	35	11	16	35	1.85
451992--452086	32	3.0	32	95	0	172	34	11	17	35	1.86
452043--452067	13	1.9	13	100	0	50	36	16	16	32	1.90
452163--452290	52	2.5	51	91	3	195	34	17	19	28	1.94
459944--459973	13	2.3	13	100	0	60	36	13	16	33	1.88
459923--459990	33	2.1	33	88	5	102	33	20	13	32	1.91
474465--474490	8	3.2	8	100	0	52	15	0	23	61	1.33
475126--475168	21	2.0	21	90	0	68	20	39	27	11	1.88
476543--476586	21	2.0	21	86	4	61	36	2	29	31	1.70
480343--480417	20	3.8	20	87	0	114	33	13	12	41	1.81
481280--481326	21	2.4	20	86	13	71	27	25	12	34	1.92
496991--497061	20	3.6	20	84	7	83	39	14	15	30	1.87
497011--497061	19	2.6	19	87	9	68	41	15	15	27	1.88
497395--497448	20	2.6	21	82	2	65	31	18	14	35	1.91
497850--498489	156	4.1	156	82	4	630	38	18	16	26	1.92
502018--502055	20	1.9	20	100	0	76	31	18	10	39	1.85
502855--502905	20	2.6	20	90	3	77	39	17	13	29	1.88
508348--508422	20	3.8	20	85	5	89	41	18	10	29	1.84
508492--508518	13	2.1	13	100	0	54	40	14	14	29	1.86
508473--508536	32	2.0	33	87	9	96	40	15	15	28	1.88
508826--509175	150	2.3	153	82	6	406	38	21	16	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510927--511022	20	5.0	20	70	19	87	38	9	29	22	1.86
510928--511022	19	5.0	19	68	18	72	37	9	29	23	1.86
511731--511768	20	1.9	20	84	10	51	18	0	15	65	1.27
516871--516930	22	2.8	21	77	7	66	30	18	5	46	1.70
525395--526094	42	16.6	42	72	10	389	16	27	19	35	1.94
525332--525667	85	4.0	84	81	5	322	17	27	19	36	1.93
525437--525963	127	4.2	127	75	7	417	17	28	19	34	1.94
525429--526094	85	7.9	84	80	1	584	16	27	19	36	1.93
525569--526048	167	2.9	168	84	2	624	17	28	19	34	1.94
526365--526428	19	3.3	19	73	16	51	75	6	1	17	1.09
526380--526427	22	2.2	21	85	7	60	79	6	0	14	0.92
526494--526539	23	2.0	23	95	0	83	43	8	23	23	1.82
530022--530416	162	2.4	165	84	5	507	46	7	13	32	1.72
530734--530790	20	3.0	20	84	7	82	33	15	15	35	1.90
530835--530865	13	2.4	13	100	0	62	32	16	12	38	1.86
530819--530886	33	2.1	33	91	5	111	30	13	17	38	1.88
532090--532168	39	2.0	40	95	2	142	50	10	13	25	1.73
534006--534031	13	2.0	13	100	0	52	30	15	15	38	1.88
534711--534753	21	2.0	21	90	0	68	32	27	2	37	1.70
536132--536176	20	2.1	21	84	8	56	6	26	44	22	1.77
536818--536848	8	3.8	8	95	4	53	61	22	0	16	1.34
542765--542803	13	3.0	13	92	0	69	33	15	12	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
542863--542911	21	2.4	21	80	10	57	28	16	16	38	1.90
546328--546352	13	1.9	13	100	0	50	36	16	16	32	1.90
546305--546372	33	2.1	33	88	2	102	32	14	17	35	1.91
548435--548477	20	2.1	20	82	4	50	9	27	46	16	1.77
548918--548942	13	1.9	13	100	0	50	36	16	16	32	1.90
554333--554357	13	1.9	13	100	0	50	36	16	16	32	1.90
554310--554377	33	2.1	33	88	2	102	32	14	17	35	1.91
554409--554461	20	2.6	21	84	3	72	28	16	15	39	1.89
554449--554473	13	1.9	13	100	0	50	36	16	16	32	1.90
555882--555906	13	1.9	13	100	0	50	36	16	16	32	1.90
558428--558484	19	2.9	19	86	2	78	33	17	14	35	1.90
563989--564042	19	2.8	20	82	5	65	35	18	18	27	1.94
565689--565739	26	2.0	26	88	3	77	27	3	33	35	1.75
565689--565749	23	2.5	24	84	10	72	26	3	34	36	1.73
565712--565760	23	2.2	22	82	7	64	18	2	38	40	1.62
565730--565898	34	5.0	34	94	0	293	26	0	32	40	1.56
570638--570765	34	3.8	34	91	0	202	25	0	33	40	1.61
571452--571496	20	2.1	22	84	8	58	15	26	35	22	1.94
571776--571818	21	2.0	22	86	4	61	51	0	20	27	1.48
578107--578153	19	2.4	20	85	7	69	38	14	17	29	1.89
584456--584518	33	1.9	33	87	6	92	36	15	12	34	1.86
585331--585613	44	6.5	44	73	5	173	41	16	22	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
585390--585628	132	1.8	132	80	3	293	41	15	23	19	1.90
585306--585698	88	4.4	88	75	6	269	42	15	22	20	1.89
585665--585884	93	2.4	92	83	6	282	40	12	24	22	1.89
585627--585837	46	4.6	45	72	7	145	41	10	26	21	1.86
585718--585857	46	3.0	46	68	10	122	38	14	26	20	1.91
585859--586404	35	15.6	34	84	4	520	45	14	19	20	1.85
585859--586404	105	5.2	105	81	1	596	45	14	19	20	1.85
586782--587105	92	3.6	92	79	8	358	31	13	26	28	1.94
586782--587111	181	1.8	179	84	5	450	31	13	26	28	1.94
587549--587718	89	1.9	89	85	4	236	44	12	18	24	1.84
587820--587861	17	2.5	17	88	0	57	2	2	11	83	0.84
590153--590245	42	2.2	42	88	1	132	36	18	3	41	1.66
590965--592079	155	7.1	155	79	3	1031	38	20	15	25	1.91
594041--594092	20	2.6	21	81	9	63	42	15	11	30	1.82
594082--594106	13	1.9	13	100	0	50	32	16	16	36	1.90
594094--594146	20	2.6	21	84	3	72	39	15	16	28	1.89
594180--594227	20	2.5	20	89	3	71	37	20	12	29	1.90
599143--599178	13	2.8	13	95	0	63	33	16	16	33	1.92
601033--601077	22	2.0	22	87	8	65	35	2	28	33	1.70
601634--601658	13	1.9	13	100	0	50	32	16	16	36	1.90
602955--603195	122	2.0	122	81	5	290	49	5	11	33	1.62
603750--603795	23	2.0	22	84	16	58	45	8	8	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613339--613464	67	1.9	67	83	6	166	30	11	17	39	1.86
616329--616392	33	1.9	33	93	0	110	53	12	6	28	1.62
616777--616824	21	2.3	20	86	13	71	33	4	16	45	1.67
617926--618075	51	2.9	51	87	2	212	42	19	14	24	1.88
619827--619865	21	1.9	20	84	5	51	41	15	7	35	1.76
621463--621489	12	2.2	12	100	0	54	29	33	25	11	1.91
633144--633217	1	74.0	1	75	0	67	87	12	0	0	0.53
633143--633221	9	8.4	9	86	13	115	86	13	0	0	0.58
633143--633221	29	2.8	27	87	9	113	86	13	0	0	0.58
633143--633230	42	2.2	40	85	8	115	84	14	1	0	0.69
633143--633220	38	2.0	40	92	5	133	85	14	0	0	0.59
634669--634937	28	9.7	27	81	6	270	35	27	17	19	1.94
634695--634937	55	4.4	55	81	7	251	36	27	17	19	1.94
635020--635943	101	9.4	100	83	6	968	24	25	16	33	1.96
635122--635995	144	6.0	141	83	7	809	24	25	16	33	1.96
634975--635948	245	4.0	245	88	4	1351	24	24	16	33	1.96
636868--636894	13	2.1	13	100	0	54	29	14	14	40	1.86
636848--636913	33	2.0	33	87	0	96	31	13	12	42	1.81
640148--640200	20	2.7	20	81	0	61	35	7	18	37	1.80
646372--646396	13	1.9	13	100	0	50	28	16	16	40	1.89
646642--646671	14	2.1	14	100	0	60	36	33	0	30	1.58
648209--648250	22	1.9	22	90	0	66	40	4	33	21	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648761--648787	13	2.1	13	100	0	54	29	14	14	40	1.86
648771--648827	19	2.9	19	89	2	87	31	15	17	35	1.92
651533--651577	21	2.1	21	84	8	56	53	4	20	22	1.63
653381--653419	15	2.6	15	91	0	60	51	15	20	12	1.76
655490--655528	13	3.0	13	96	0	69	33	15	12	38	1.85
655649--655695	21	2.3	21	79	20	55	34	19	4	42	1.70
655651--655693	20	2.2	19	84	16	52	32	18	4	44	1.71
659804--659862	28	2.1	28	100	0	118	33	16	10	38	1.83
660060--660103	22	2.0	23	82	13	56	59	13	9	18	1.60
661718--661759	22	2.1	19	86	13	57	52	0	4	42	1.22

Tables:   1   2   3   4   5