genome.fa.s80.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold80
Parameters: 2 7 7 80 10 50 1000
Length:  1499392

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 882 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1405958--1406024	34	2.0	33	88	2	98	38	11	16	32	1.85
1406044--1406110	33	2.0	33	85	0	89	41	14	10	32	1.80
1406066--1406090	13	1.9	13	100	0	50	32	16	16	36	1.90
1416005--1416454	52	9.0	49	77	5	364	34	16	25	24	1.95
1416113--1416454	150	2.3	149	86	0	486	34	17	24	23	1.96
1416005--1416458	101	4.5	100	77	8	384	34	16	25	24	1.95
1416497--1416665	28	6.0	26	71	13	104	18	18	28	33	1.96
1416471--1416714	29	8.6	29	77	9	157	19	18	31	31	1.96
1416471--1416715	58	4.3	56	80	8	228	19	18	31	31	1.95
1416547--1416708	87	1.9	86	90	1	261	19	19	31	29	1.96
1417075--1417196	37	3.3	37	98	0	235	43	13	15	27	1.84
1432184--1432309	20	5.8	20	72	21	101	38	11	15	34	1.83
1432335--1432361	13	2.1	13	100	0	54	37	14	14	33	1.88
1432347--1432400	19	2.7	20	83	8	74	33	14	12	38	1.85
1434609--1434665	20	2.8	21	89	5	82	38	14	15	31	1.87
1439027--1439627	155	3.9	154	79	5	606	25	16	18	39	1.91
1445936--1445999	33	2.0	32	87	3	92	42	17	15	25	1.88
1451416--1451474	19	3.4	19	69	26	67	37	13	15	33	1.86
1451416--1451507	32	2.9	32	88	8	134	39	13	15	32	1.85
1459793--1459822	13	2.3	13	94	0	51	40	13	10	36	1.78
1459908--1459934	13	2.1	13	100	0	54	40	14	14	29	1.86
1462281--1462321	21	2.0	21	90	0	64	29	31	0	39	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1465588--1465892	154	2.0	155	82	4	375	37	18	19	24	1.94
1466574--1466947	141	2.6	142	86	4	488	42	8	12	37	1.71
1467857--1467898	10	3.9	11	84	12	52	0	19	2	78	0.86
1467862--1467899	12	3.2	12	92	7	60	0	23	2	73	0.95
1468011--1468052	19	2.2	19	83	8	50	19	9	4	66	1.38
1469676--1469714	18	2.2	18	86	9	53	46	10	2	41	1.51
1475523--1475556	2	17.0	2	90	0	50	44	0	2	52	1.16
1475808--1475862	28	2.0	28	96	0	101	18	9	21	50	1.74
1475844--1475912	24	2.8	24	77	4	66	23	5	26	44	1.75
1480386--1480440	28	2.0	28	96	0	101	20	10	20	49	1.78
1480445--1480490	24	1.9	24	86	0	65	23	6	28	41	1.79
1483984--1484447	231	2.0	229	94	1	813	32	11	10	45	1.74
1484570--1484872	165	1.8	166	82	6	391	35	11	9	43	1.74
1486552--1486592	21	2.0	21	85	9	57	26	0	17	56	1.41
1489987--1490092	37	2.9	37	88	0	158	24	14	20	40	1.90
1491209--1491275	33	2.0	33	88	0	98	34	11	13	40	1.81
1491229--1491253	13	1.9	13	100	0	50	36	16	16	32	1.90
1491316--1491340	13	1.9	13	100	0	50	32	16	16	36	1.90
1491349--1491468	52	2.3	52	95	0	213	35	19	17	28	1.94
1499323--1499363	21	2.0	21	90	0	64	36	14	17	31	1.90

Tables:   1   2   3   4   5   6   7   8

The End!